Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019812.1 Corchorus olitorius cultivar O-4 contig19845, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30915

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
944--979
18
2.1
18
89
5
56
44
5
11
38
1.63
1835--1870
19
1.9
18
88
5
54
41
8
22
27
1.82
1823--1882
30
2.0
30
83
6
77
41
8
18
31
1.80
3293--3440
76
2.0
72
83
7
181
22
20
16
39
1.92
7003--7053
18
2.5
20
78
18
61
41
1
19
37
1.63
17328--17364
19
1.9
19
94
0
65
13
35
5
45
1.66
26646--26690
13
3.4
13
78
6
54
11
71
0
17
1.14
26657--26700
15
2.9
16
83
16
58
9
72
0
18
1.10
29156--29196
18
2.4
17
84
8
55
53
12
7
26
1.64
29161--29196
18
2.0
18
94
0
63
52
11
8
27
1.65
29402--29470
35
2.0
35
97
0
129
40
15
18
24
1.90

Tables:   1

The End!