Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001982.1 Corchorus olitorius cultivar O-4 contig01982, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 943

Length: 1572
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.36


Found at i:761 original size:39 final size:40

Alignment explanation


    Indices: 702--782  Score: 128
    Period size: 39  Copynumber: 2.0  Consensus size: 40

        692 ATACCTAAGA

                           *                 *      
        702 ATTTAATTAATGTAAGTATTTCAGTTATTATA-GTATTAC
          1 ATTTAATTAATGTAAATATTTCAGTTATTATATATATTAC

                                 *                  
        741 ATTTAATTAATGTAAATATTTTAGTTATTATATATATTAC
          1 ATTTAATTAATGTAAATATTTCAGTTATTATATATATTAC

              
        781 AT
          1 AT

        783 AGGAATTAAA


Statistics
Matches: 38,  Mismatches: 3, Indels: 1
        0.90            0.07        0.02

Matches are distributed among these distances:
  39   30  0.79
  40    8  0.21

ACGTcount: A:0.38, C:0.04, G:0.07, T:0.51


Consensus pattern (40 bp):   
ATTTAATTAATGTAAATATTTCAGTTATTATATATATTAC
Done.