Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019820.1 Corchorus olitorius cultivar O-4 contig19853, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1794
ACGTcount: A:0.32, C:0.11, G:0.18, T:0.40


Found at i:274 original size:30 final size:29

Alignment explanation


    Indices: 231--287  Score: 89
    Period size: 30  Copynumber: 1.9  Consensus size: 29

        221 TTAGGATTAG

                                         
        231 TTATTTATGCTTTAATTTTCAA-TTTCCT
          1 TTATTTATGCTTTAATTTTCAAGTTTCCT

                                         
        259 TTATCTTATGTCTTTAATTTTCAAGTTTC
          1 TTAT-TTATG-CTTTAATTTTCAAGTTTC

        288 ATTAATAAAC


Statistics
Matches: 26,  Mismatches: 0, Indels: 3
        0.90            0.00        0.10

Matches are distributed among these distances:
  28    4  0.15
  29    5  0.19
  30   13  0.50
  31    4  0.15

ACGTcount: A:0.21, C:0.14, G:0.05, T:0.60


Consensus pattern (29 bp):   
TTATTTATGCTTTAATTTTCAAGTTTCCT
Done.