Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019821.1 Corchorus olitorius cultivar O-4 contig19854, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12748

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2809--2866
30
1.9
31
86
10
84
55
3
10
31
1.50
2808--2880
32
2.3
31
84
11
87
49
2
9
38
1.50
2808--2880
31
2.3
31
83
6
85
49
2
9
38
1.50
5419--5883
238
2.0
238
99
0
921
35
10
13
40
1.80
6880--6906
2
13.5
2
100
0
54
48
0
0
51
1.00
8074--8100
10
2.7
10
100
0
54
29
29
40
0
1.57
10186--10235
26
1.9
25
88
8
73
42
4
0
54
1.19
10617--10660
14
3.1
14
75
12
54
38
4
11
45
1.61
10617--10670
28
1.9
28
84
0
72
40
3
11
44
1.58
11654--11680
5
5.4
5
100
0
54
22
0
0
77
0.76

Tables:   1

The End!