Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019823.1 Corchorus olitorius cultivar O-4 contig19856, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6655
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.32


Found at i:2113 original size:17 final size:18

Alignment explanation


    Indices: 2092--2135  Score: 54
    Period size: 17  Copynumber: 2.5  Consensus size: 18

       2082 ATAATTATTG

                          *   
       2092 AATAATAATAATTATCTC
          1 AATAATAATAATTAGCTC

                  *  *        
       2110 -ATAATTATTATTAGCTC
          1 AATAATAATAATTAGCTC

                     
       2127 AATAATAAT
          1 AATAATAAT

       2136 GGTCAGAAAA


Statistics
Matches: 21,  Mismatches: 4, Indels: 2
        0.78            0.15        0.07

Matches are distributed among these distances:
  17   14  0.67
  18    7  0.33

ACGTcount: A:0.48, C:0.09, G:0.02, T:0.41


Consensus pattern (18 bp):   
AATAATAATAATTAGCTC
Done.