Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019826.1 Corchorus olitorius cultivar O-4 contig19859, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53876

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9561--9623
32
2.0
32
87
6
92
44
14
15
25
1.84
10295--10398
52
2.0
52
98
0
199
29
17
20
32
1.95
11105--11603
124
4.0
125
96
2
896
21
31
4
42
1.74
11504--11703
100
2.0
100
97
0
373
23
32
4
40
1.73
11603--11954
126
2.8
127
96
0
643
22
31
4
40
1.75
11255--11954
350
2.0
350
95
1
1262
22
31
4
41
1.74
12764--12815
9
5.7
9
79
4
59
23
26
17
32
1.96
13553--13631
29
2.6
30
76
9
81
27
20
24
27
1.99
13706--13758
19
2.8
19
82
2
72
47
0
0
52
1.00
13719--13757
17
2.3
17
90
0
60
48
0
0
51
1.00
14624--14692
31
2.3
31
87
7
97
27
17
28
26
1.97
22192--22318
31
4.1
31
93
4
220
31
15
9
43
1.79
23058--23149
37
2.4
38
84
10
109
53
4
17
25
1.62
39606--40164
187
3.0
187
90
2
840
39
9
15
35
1.80
45016--45274
129
2.0
129
99
0
509
27
12
25
34
1.92
52409--52463
26
2.0
28
89
10
87
50
23
10
14
1.74

Tables:   1

The End!