Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019835.1 Corchorus olitorius cultivar O-4 contig19868, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  114216

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3193--3490
75
4.0
75
87
2
395
24
24
17
33
1.96
3597--3764
37
4.5
37
88
0
219
35
21
19
23
1.96
4019--4089
14
4.7
14
68
21
54
22
11
28
38
1.88
4011--4075
33
2.0
33
87
0
94
24
13
27
33
1.93
4019--4195
53
3.5
53
87
4
249
24
13
28
33
1.93
4079--4172
25
3.6
25
66
13
73
27
15
28
27
1.97
4391--4444
28
1.9
28
88
0
81
29
35
16
18
1.93
8134--8175
1
42.0
1
95
0
75
0
0
0
97
0.03
18839--18878
21
2.0
20
90
5
62
55
20
5
20
1.62
19321--19502
49
3.8
49
92
2
282
36
19
7
36
1.80
26259--26299
2
20.5
2
94
0
73
51
46
0
2
1.14
26538--26609
31
2.3
31
75
17
78
26
4
8
61
1.43
26859--26902
18
2.5
17
82
10
52
38
0
4
56
1.20
27030--27085
12
4.8
12
75
4
51
28
44
23
3
1.70
27074--27160
16
5.5
15
75
15
77
39
41
13
5
1.69
27074--27160
32
2.7
32
87
7
131
39
41
13
5
1.69
27135--27176
16
2.6
16
88
0
57
50
35
9
4
1.56
41861--41950
8
11.6
8
71
11
53
63
0
12
24
1.28
42003--42055
19
2.8
18
85
5
61
64
0
7
28
1.21
41967--42077
46
2.4
46
92
1
179
61
0
9
28
1.32
41976--42036
27
2.3
27
82
5
70
62
1
8
27
1.33
41966--42077
23
4.8
25
71
22
84
60
0
8
29
1.33
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54025--54059
17
2.1
17
89
5
54
71
5
8
14
1.29
54558--54616
30
2.0
30
86
6
84
32
16
5
45
1.70
64245--64278
2
17.0
2
88
11
52
47
2
0
50
1.16
65269--65344
16
4.7
17
82
11
97
7
13
38
40
1.73
65353--65394
17
2.4
18
76
11
52
4
14
35
45
1.66
66268--66303
17
2.1
17
89
0
54
13
13
33
38
1.85
69794--69833
21
1.9
21
94
0
71
12
10
2
75
1.15
71788--71828
21
2.0
21
85
9
57
29
19
9
41
1.83
72198--72239
6
6.7
6
82
17
50
80
16
0
2
0.81
72197--72234
7
5.4
7
87
9
51
81
15
0
2
0.80
72197--72239
13
3.3
13
90
6
61
81
16
0
2
0.79
74450--74491
21
2.0
21
100
0
84
14
9
33
42
1.78
76709--76762
25
2.2
25
90
6
83
48
1
5
44
1.37
76740--76790
23
2.3
22
80
16
52
47
0
1
50
1.12
77798--77838
19
2.1
20
90
4
66
19
0
9
70
1.14
80710--80745
13
2.8
13
91
4
56
44
0
11
44
1.39
80866--81014
22
6.8
22
69
10
72
34
12
10
41
1.78
80866--81015
66
2.3
66
75
6
151
34
12
10
42
1.78
83905--83943
15
2.4
17
83
12
55
0
5
23
71
1.05
87466--87547
41
2.0
41
95
2
148
35
14
18
31
1.91
90844--90883
2
20.0
2
100
0
80
50
0
0
50
1.00
95796--95843
19
2.5
19
83
10
62
33
2
4
60
1.27
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110073--110171
51
1.9
51
97
0
189
30
14
8
47
1.72

Tables:   1

The End!