Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019841.1 Corchorus olitorius cultivar O-4 contig19874, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8466
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.31


Found at i:752 original size:21 final size:21

Alignment explanation


    Indices: 727--775  Score: 62
    Period size: 21  Copynumber: 2.3  Consensus size: 21

        717 CCATTCACCA

                        *        
        727 TGCCATCACCGGTTAAGCCCG
          1 TGCCATCACCGGCTAAGCCCG

                 *         *   * 
        748 TGCCACCACCGGCTATGCCTG
          1 TGCCATCACCGGCTAAGCCCG

                   
        769 TGCCATC
          1 TGCCATC

        776 GCCATTCCAA


Statistics
Matches: 23,  Mismatches: 5, Indels: 0
        0.82            0.18        0.00

Matches are distributed among these distances:
  21   23  1.00

ACGTcount: A:0.16, C:0.41, G:0.22, T:0.20


Consensus pattern (21 bp):   
TGCCATCACCGGCTAAGCCCG
Done.