Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019844.1 Corchorus olitorius cultivar O-4 contig19877, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42818

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
342--523
96
1.9
96
91
0
301
45
12
10
31
1.76
2490--2575
36
2.4
37
82
5
113
46
11
19
22
1.82
2600--2932
39
8.5
39
86
1
441
42
19
17
20
1.90
2593--2932
157
2.2
156
88
2
484
42
19
17
20
1.90
3029--3167
39
3.3
44
75
14
143
45
15
14
24
1.84
3195--3235
20
2.0
20
95
0
73
34
24
19
21
1.97
5302--5336
18
1.9
18
94
0
61
22
20
20
37
1.95
5486--5688
101
2.0
101
100
0
406
33
14
10
40
1.81
5801--5857
18
3.2
18
65
9
53
21
5
29
43
1.74
13879--13923
19
2.4
18
85
10
56
42
2
2
53
1.25
24415--24459
12
3.7
12
83
16
65
75
6
0
17
1.01
24413--24467
25
2.2
25
100
0
110
74
7
0
18
1.04
24413--24470
12
4.8
11
80
17
62
74
6
0
18
1.04
24482--24524
22
2.0
22
85
0
59
30
23
20
25
1.99
34644--34677
2
16.5
2
93
6
59
50
0
2
47
1.16
36774--36942
78
2.2
78
90
2
259
33
13
1
52
1.49
40708--40773
32
2.1
32
100
0
132
25
21
19
33
1.97

Tables:   1

The End!