genome.fa.s19845.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019845.1 Corchorus olitorius cultivar O-4 contig19878, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40081

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1786--1827	18	2.3	19	80	12	52	71	2	7	19	1.20
3523--3550	9	3.1	9	100	0	56	21	10	42	25	1.85
3771--3849	39	2.0	39	100	0	158	25	7	17	49	1.73
3966--4026	30	2.0	30	87	0	86	40	21	3	34	1.69
10266--10290	2	12.5	2	100	0	50	52	0	0	48	1.00
10426--10491	18	3.6	18	83	8	80	0	4	13	81	0.83
10416--10494	11	7.9	10	76	10	65	0	3	13	82	0.81
10416--10494	10	7.8	11	74	20	66	0	3	13	82	0.81
13367--13514	74	2.0	74	98	0	287	31	12	27	28	1.92
14569--14604	2	18.5	2	88	5	56	44	0	0	55	0.99
15907--15993	30	3.2	30	61	32	77	37	1	18	42	1.58
15753--16337	51	11.4	51	90	3	781	38	2	16	42	1.62
15753--16437	51	13.4	50	86	5	502	39	3	15	41	1.63
16377--16525	52	2.9	51	77	9	133	40	6	16	35	1.75
17254--17293	20	2.0	20	90	0	62	17	12	7	62	1.52
17077--17279	48	4.2	48	89	2	318	12	20	20	46	1.83
17256--17299	20	2.2	20	83	0	52	15	15	9	59	1.61
17207--17644	68	6.4	68	91	1	698	14	20	16	48	1.81
17323--17361	20	2.0	20	94	0	69	20	10	5	64	1.44
17325--17368	20	2.2	20	83	0	52	20	13	2	63	1.40
17459--17507	21	2.4	21	89	3	73	14	16	12	57	1.66
17528--17574	20	2.3	20	85	0	67	14	12	12	59	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17596--17634	20	2.0	20	94	0	69	20	10	7	61	1.52
17597--17641	20	2.2	20	88	0	63	17	13	8	60	1.58
25075--25385	155	2.0	155	96	0	577	31	18	31	18	1.95
30910--30935	12	2.2	12	100	0	52	53	7	15	23	1.67
31691--32175	51	9.4	50	88	5	609	38	2	15	42	1.62
32027--32220	105	1.8	105	81	2	237	39	3	15	41	1.63
32134--32340	101	2.0	103	83	7	262	40	5	16	37	1.72
32165--32364	52	3.9	51	71	8	131	41	6	17	36	1.74
32915--33118	48	4.2	48	90	3	322	13	21	20	44	1.85
33093--33130	20	1.9	20	94	0	67	21	7	7	63	1.47
33094--33138	20	2.2	20	88	0	63	20	11	8	60	1.57
33161--33206	20	2.3	20	92	0	74	17	13	6	63	1.50
33047--33253	68	3.0	68	90	0	333	14	19	17	48	1.81
33181--33291	44	2.4	47	88	5	165	13	19	20	45	1.84
33113--33359	112	2.2	115	91	2	392	14	18	18	48	1.82
33272--33311	20	2.0	20	95	0	71	17	10	7	65	1.46
33274--33318	20	2.2	20	88	0	63	15	13	8	62	1.54
32997--33637	180	3.4	182	83	9	768	13	19	18	48	1.81
33229--33685	68	6.8	68	89	1	679	13	19	17	49	1.80
33340--33386	20	2.3	20	96	0	85	14	8	8	68	1.39
33409--33454	20	2.3	20	88	0	65	13	15	10	60	1.58
33047--33501	248	1.8	248	91	0	759	14	19	17	49	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33477--33522	20	2.3	20	92	0	74	15	15	8	60	1.57
33545--33590	20	2.3	20	88	0	65	13	15	10	60	1.58
33613--33658	20	2.3	20	96	0	83	13	15	10	60	1.58
38517--38565	21	2.3	21	79	6	55	18	8	6	67	1.37
38975--39016	15	2.7	15	92	3	66	64	14	9	11	1.50

Tables:   1

The End!