Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019846.1 Corchorus olitorius cultivar O-4 contig19879, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5952

Tables:   1   

This is table  1  of  1  ( 9 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42--67
11
2.4
11
100
0
52
69
7
15
7
1.35
2148--2177
15
2.1
15
93
6
53
63
6
16
13
1.50
2537--2586
21
2.4
21
89
0
73
16
24
44
16
1.86
4665--4766
33
3.2
31
76
18
93
42
11
6
39
1.68
4701--4757
29
2.0
29
93
3
98
38
12
5
43
1.65
4767--4821
26
2.0
28
89
6
87
43
16
9
30
1.79
4804--4875
22
3.3
21
71
9
63
37
12
9
40
1.76
4812--4859
22
2.3
22
85
7
64
35
8
10
45
1.68
5228--5269
15
2.7
15
92
3
66
64
14
9
11
1.50

Tables:   1

The End!