Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019851.1 Corchorus olitorius cultivar O-4 contig19884, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1879
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28


Found at i:828 original size:150 final size:150

Alignment explanation


    Indices: 520--852  Score: 522
    Period size: 150  Copynumber: 2.2  Consensus size: 150

        510 ATTTTTGGCG

                     *     *      **      *    **                    *       
        520 CAACATCTCTTTTTGACACGCCTAGTGGGAAACAATAACAACTTGTCTTCTCAACTCGGCGTCTC
          1 CAACATCTCCTTTTGGCACGCCCGGTGGGACA-AACGACAACTTGTCTTCTCAACTCAGCGTCTC

                                                                             
        585 CATAAGCTTTCTCTCTCTCAAAGTCGGCGATCCCCGACTCTCTTCTCAATTTTCCGTGCTACGTT
         65 CATAAGCTTTCTCTCTCTCAAAGTCGGCGATCCCCGACTCTCTTCTCAATTTTCCGTGCTACGTT

                           **    
        650 GGACTGCCCACTCGGTTGCAC
        130 GGACTGCCCACTCGGCCGCAC

                     *           *    *                                      
        671 CAACATCTCTTTTTGGCACGCTCGGTTGGACAAACGACAACTTGTCTTCTCAACTCAGCGTCTCC
          1 CAACATCTCCTTTTGGCACGCCCGGTGGGACAAACGACAACTTGTCTTCTCAACTCAGCGTCTCC

                                                * *                          
        736 ATAAGCTTTCTCTCTCTCAAAGTCGGCGATCCCCGAGTTTCTTCTCAATTTTCCGTGCTACGTTG
         66 ATAAGCTTTCTCTCTCTCAAAGTCGGCGATCCCCGACTCTCTTCTCAATTTTCCGTGCTACGTTG

                                
        801 GACTGCCCACTCGGCCGCAC
        131 GACTGCCCACTCGGCCGCAC

                                            
        821 CAACATCTCCTTTTGGCACGCCCGGTGGGACA
          1 CAACATCTCCTTTTGGCACGCCCGGTGGGACA

        853 CAACAAACAG


Statistics
Matches: 166,  Mismatches: 16, Indels: 1
        0.91            0.09        0.01

Matches are distributed among these distances:
 150  140  0.84
 151   26  0.16

ACGTcount: A:0.20, C:0.33, G:0.18, T:0.29


Consensus pattern (150 bp):   
CAACATCTCCTTTTGGCACGCCCGGTGGGACAAACGACAACTTGTCTTCTCAACTCAGCGTCTCC
ATAAGCTTTCTCTCTCTCAAAGTCGGCGATCCCCGACTCTCTTCTCAATTTTCCGTGCTACGTTG
GACTGCCCACTCGGCCGCAC
Done.