Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019857.1 Corchorus olitorius cultivar O-4 contig19890, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5506
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.32


Found at i:1779 original size:22 final size:21

Alignment explanation


    Indices: 1751--1804  Score: 60
    Period size: 19  Copynumber: 2.6  Consensus size: 21

       1741 AAAGTTCGTG

                                  
       1751 TTTGAAGACTTATTGAAGATAA
          1 TTTGAAGA-TTATTGAAGATAA

                               * 
       1773 TTTGAAGA-T-TTGAAGATCA
          1 TTTGAAGATTATTGAAGATAA

                          
       1792 -TTGAAGAATTATT
          1 TTTGAAG-ATTATT

       1805 TCAAGAAGCA


Statistics
Matches: 28,  Mismatches: 1, Indels: 7
        0.78            0.03        0.19

Matches are distributed among these distances:
  18    6  0.21
  19   10  0.36
  20    2  0.07
  21    2  0.07
  22    8  0.29

ACGTcount: A:0.39, C:0.04, G:0.19, T:0.39


Consensus pattern (21 bp):   
TTTGAAGATTATTGAAGATAA

Done.