genome.fa.s19868.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019868.1 Corchorus olitorius cultivar O-4 contig19901, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43796

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10794--10837	3	14.7	3	95	0	79	29	0	0	70	0.88
22099--22148	3	17.7	3	78	12	52	66	0	34	0	0.92
22458--22625	38	4.6	37	86	6	220	42	11	17	27	1.84
22600--22682	27	3.1	27	92	0	139	44	6	16	32	1.72
23060--23188	34	3.8	34	89	1	177	25	17	20	36	1.94
23058--23207	34	4.5	33	87	4	169	24	16	18	40	1.90
27394--27420	2	13.5	2	100	0	54	48	0	0	51	1.00
28476--28505	12	2.6	11	90	10	51	80	0	20	0	0.72
29748--29827	36	2.2	37	80	10	94	17	18	21	42	1.89
29957--30018	29	2.1	29	84	0	79	24	17	20	37	1.94
30093--30131	8	4.9	8	90	0	60	33	15	2	48	1.58
30160--30216	8	7.1	8	75	0	51	26	26	3	43	1.70
30162--30217	24	2.3	24	90	0	85	26	28	3	41	1.72
30251--30493	36	6.8	35	74	12	174	17	14	29	38	1.90
30243--30498	107	2.4	107	90	2	390	18	15	28	37	1.91
33870--34010	28	5.1	27	80	15	148	56	0	17	25	1.46
34039--34186	63	2.4	60	85	7	188	52	1	20	25	1.55
34084--34217	30	4.4	31	72	21	113	55	0	20	23	1.48
34147--34218	30	2.4	30	93	2	119	61	0	18	20	1.35
34249--34354	53	2.0	53	87	3	151	46	0	18	33	1.56
34263--34475	30	7.6	25	68	25	99	48	0	21	30	1.54
34324--34532	34	6.7	30	81	11	185	45	0	21	32	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34301--34621	89	3.6	89	84	7	402	45	0	21	31	1.58
34490--34591	53	1.9	54	87	2	152	44	1	19	34	1.62
34543--34612	35	2.0	34	83	2	86	42	1	22	32	1.63
37132--37173	22	1.9	22	90	9	68	19	19	4	57	1.58
37132--37180	20	2.3	22	86	10	66	22	16	6	55	1.63
38430--38456	14	1.9	14	100	0	54	59	14	11	14	1.62
40376--40514	39	3.6	39	96	0	251	38	17	20	23	1.93

Tables:   1

The End!