Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019872.1 Corchorus olitorius cultivar O-4 contig19905, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5037
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31


Found at i:3876 original size:120 final size:120

Alignment explanation


    Indices: 3663--3883  Score: 381
    Period size: 120  Copynumber: 1.8  Consensus size: 120

       3653 ACTTCTTCCT

                                                                             
       3663 TAGCATCTTCAAGCTTCTCCAAGCCTCCTTGCCGCATATGCACATCCTTGCCATGATCTCCATTG
          1 TAGCATCTTCAAGCTTCTCCAAGCCTCCTTGCCGCATATGCACATCCTTGCCATGATCTCCATTG

            *                                                      
       3728 TGCTCTTCAAGACCATGATGAGTCCTTGGCGCATCAACTTGCTCCAATGAACTCC
         66 AGCTCTTCAAGACCATGATGAGTCCTTGGCGCATCAACTTGCTCCAATGAACTCC

                              *        *         *   *                       
       3783 TAGCATCTTCAAGCTTCTTCAAGCCTCTTTGCCGCATGTGCTCATCCTCT-CCATGATCTCCATT
          1 TAGCATCTTCAAGCTTCTCCAAGCCTCCTTGCCGCATATGCACATCCT-TGCCATGATCTCCATT

                                                 
       3847 GAGCTCTTCAAGACCATGATGAGTCCTTGGCGCATCA
         65 GAGCTCTTCAAGACCATGATGAGTCCTTGGCGCATCA

       3884 TCCCCTCTCC


Statistics
Matches: 95,  Mismatches: 5, Indels: 2
        0.93            0.05        0.02

Matches are distributed among these distances:
 120   94  0.99
 121    1  0.01

ACGTcount: A:0.21, C:0.33, G:0.16, T:0.30


Consensus pattern (120 bp):   
TAGCATCTTCAAGCTTCTCCAAGCCTCCTTGCCGCATATGCACATCCTTGCCATGATCTCCATTG
AGCTCTTCAAGACCATGATGAGTCCTTGGCGCATCAACTTGCTCCAATGAACTCC
Done.