Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019874.1 Corchorus olitorius cultivar O-4 contig19907, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87395

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
353--402
21
2.4
21
86
6
75
28
26
18
28
1.98
3932--3975
21
2.1
21
82
0
52
27
18
18
36
1.94
11529--11593
32
2.0
32
93
0
112
21
18
20
40
1.92
14738--14793
7
7.7
7
81
15
53
66
1
1
30
1.12
14722--14795
6
12.0
6
71
16
53
64
2
2
29
1.21
14721--14795
25
3.0
24
75
14
71
65
2
2
29
1.20
15759--15808
21
2.4
21
90
6
75
26
28
18
28
1.98
17613--17753
33
4.3
31
79
9
120
43
22
7
26
1.79
18331--18362
15
2.1
15
100
0
64
15
6
28
50
1.68
30647--30680
17
2.0
16
88
11
50
55
0
5
38
1.24
33531--33597
21
3.2
21
66
16
57
50
13
5
29
1.65
33518--33598
42
1.9
42
94
0
144
46
14
7
30
1.72
34192--34290
51
1.9
51
89
6
155
45
7
14
33
1.71
36236--36287
18
2.9
18
88
0
68
13
53
15
17
1.72
41590--41630
20
2.0
20
100
0
82
43
17
24
14
1.86
42544--42580
18
2.1
18
94
0
65
35
16
13
35
1.88
43945--43984
15
2.6
16
88
4
55
62
12
10
15
1.54
44042--44089
23
2.1
23
96
0
87
37
22
12
27
1.90
45380--45439
29
2.0
30
87
6
86
35
18
8
38
1.81
47212--47264
21
2.7
19
76
5
52
16
22
43
16
1.88
50392--50429
20
1.9
20
84
10
51
71
15
5
7
1.28
50412--50481
30
2.3
31
85
9
92
68
10
11
10
1.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51767--51826
29
2.0
30
83
6
77
33
16
10
40
1.82
54101--54168
27
2.5
29
79
13
81
22
17
17
42
1.89
54527--54577
25
2.0
25
92
0
84
29
11
23
35
1.90
58986--59022
5
7.6
5
87
6
58
0
0
21
78
0.75
58986--59022
15
2.6
14
95
4
65
0
0
21
78
0.75
61066--61107
21
2.0
22
90
4
68
23
28
11
35
1.91
63104--63157
7
7.6
7
86
12
74
74
0
14
11
1.08
63111--63157
22
2.1
22
96
0
85
74
0
14
10
1.07
63548--63600
23
2.2
24
80
12
56
73
11
0
15
1.09
64119--64269
50
3.0
49
87
1
203
33
15
13
37
1.87
65119--65248
23
5.3
23
63
20
66
37
12
29
20
1.89
65101--65282
50
3.6
50
95
2
312
37
12
24
25
1.90
65974--66025
25
2.1
25
92
0
86
30
11
21
36
1.89
74126--74167
11
3.9
11
79
17
52
11
23
47
16
1.80
77209--77490
114
2.5
110
84
6
354
26
16
4
52
1.62
77209--77490
56
5.0
58
81
6
325
26
16
4
52
1.62
77390--77486
28
3.4
28
67
10
79
28
18
3
49
1.63
83777--83801
13
1.9
13
100
0
50
16
40
32
12
1.84
84352--84393
16
2.7
15
85
7
57
45
11
26
16
1.82
84405--84458
23
2.4
23
84
6
76
42
18
16
22
1.89

Tables:   1

The End!