genome.fa.s19875.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019875.1 Corchorus olitorius cultivar O-4 contig19908, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  103585

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
933--977	22	2.0	22	83	8	56	55	11	8	24	1.63
9118--9188	35	1.9	39	86	11	105	40	4	4	50	1.41
9306--9347	23	1.9	22	90	9	68	4	38	2	54	1.34
13522--13575	24	2.2	25	77	9	58	64	9	1	24	1.32
15035--15065	11	2.9	11	95	4	55	45	0	25	29	1.54
15208--15239	16	2.0	16	100	0	64	56	18	12	12	1.67
22780--22827	25	1.9	25	86	0	69	31	20	16	31	1.95
22839--22950	40	2.8	39	69	12	95	28	21	11	38	1.88
22958--23345	64	6.0	64	88	0	551	27	22	14	35	1.93
26143--26184	14	3.2	13	81	18	52	35	16	7	40	1.76
27244--27279	19	1.9	18	88	5	54	41	5	22	30	1.76
38046--38978	47	19.7	47	89	3	1308	48	5	17	28	1.70
38844--38950	54	2.0	54	92	3	180	48	6	19	25	1.73
43851--44066	41	5.3	41	78	9	201	26	24	20	29	1.99
47959--49038	47	22.7	47	88	5	1439	48	5	17	28	1.70
48857--49010	54	3.0	54	84	8	180	46	5	19	27	1.73
66468--66516	21	2.3	21	92	0	80	30	16	26	26	1.97
67453--67489	18	2.1	18	94	0	65	27	13	32	27	1.94
72596--72628	17	1.9	17	100	0	66	21	48	12	18	1.80
75419--75563	76	1.9	76	80	5	168	17	29	27	24	1.98
85770--85816	17	2.8	17	75	12	51	23	6	8	61	1.48
97586--97906	109	2.9	109	93	0	534	24	20	25	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99132--99159	2	14.0	2	100	0	56	50	0	0	50	1.00
101829--101876	22	2.2	22	100	0	96	31	12	16	39	1.86
103115--103183	16	4.2	16	75	17	79	14	20	10	55	1.68

Tables:   1

The End!