Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001988.1 Corchorus olitorius cultivar O-4 contig01988, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 642

Length: 1070
ACGTcount: A:0.34, C:0.17, G:0.24, T:0.25


Found at i:544 original size:14 final size:14

Alignment explanation


    Indices: 525--555  Score: 62
    Period size: 14  Copynumber: 2.2  Consensus size: 14

        515 TGTACAATAT

                          
        525 ATAAGAATTATACG
          1 ATAAGAATTATACG

                          
        539 ATAAGAATTATACG
          1 ATAAGAATTATACG

               
        553 ATA
          1 ATA

        556 TATATCCATC


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   17  1.00

ACGTcount: A:0.52, C:0.06, G:0.13, T:0.29


Consensus pattern (14 bp):   
ATAAGAATTATACG
Done.