Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019880.1 Corchorus olitorius cultivar O-4 contig19913, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36618

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2306--2349
17
2.5
17
81
3
52
38
9
31
20
1.84
8209--8288
28
2.9
27
88
3
115
21
17
25
36
1.95
9878--9935
19
3.3
19
72
22
72
15
50
3
31
1.61
9874--9943
33
2.1
33
100
0
140
14
48
2
34
1.58
11779--11805
9
3.0
9
100
0
54
0
0
22
77
0.76
13776--13811
15
2.5
15
90
4
56
38
8
13
38
1.75
13776--13834
13
4.3
14
81
12
61
42
6
13
37
1.71
14482--14525
12
3.7
12
81
9
54
72
0
15
11
1.11
15557--15708
69
2.2
70
88
3
218
23
28
18
29
1.98
15385--15706
174
1.9
172
88
5
488
25
26
16
31
1.97
15725--16101
35
10.8
35
88
0
556
29
18
22
28
1.98
16094--16206
34
3.2
36
71
16
119
26
22
25
25
2.00
16077--16227
69
2.2
69
93
0
257
25
19
29
26
1.98
16117--16227
35
3.2
35
73
16
113
27
19
27
26
1.99
16558--16637
27
2.9
27
88
3
115
18
18
25
37
1.94
18017--18047
16
1.9
16
100
0
62
25
48
6
19
1.72
18239--18308
33
2.1
33
97
0
131
14
47
2
35
1.59
18243--18300
19
3.3
19
70
22
63
15
48
3
32
1.62
19234--19360
41
3.1
40
76
4
128
27
14
12
44
1.82
19252--19370
41
2.9
41
79
3
141
28
12
11
47
1.77
24139--24282
22
6.5
22
77
8
134
38
15
9
36
1.79
24139--24263
65
1.9
65
82
6
155
40
14
8
36
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
24712--24820
36
3.1
34
69
7
87
51
1
0
45
1.18
24737--24801
26
2.7
24
82
15
80
58
3
0
38
1.14
24737--24806
29
2.7
25
83
16
81
57
2
0
40
1.14
24714--24845
67
1.9
67
90
7
210
54
2
0
42
1.18
26484--26534
19
2.7
19
77
14
61
47
0
1
50
1.12
27393--27426
17
2.0
17
94
0
59
35
8
35
20
1.84
28779--28831
12
4.4
13
81
11
60
45
9
5
39
1.60
29004--29044
19
2.2
19
86
0
55
60
19
7
12
1.54
33624--33667
22
2.0
22
91
8
72
63
4
9
22
1.42
34374--34427
24
2.1
27
83
10
69
44
1
0
53
1.11
34911--34940
15
1.9
16
93
6
53
20
6
10
63
1.47
34978--35065
40
2.2
41
87
2
124
36
15
13
34
1.87
35080--35231
56
2.7
56
87
4
191
32
17
11
38
1.86

Tables:   1

The End!