Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01019882.1 Corchorus olitorius cultivar O-4 contig19915, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2941
ACGTcount: A:0.23, C:0.18, G:0.19, T:0.41
Found at i:367 original size:154 final size:154
Alignment explanation
Indices: 4--1611 Score: 2325
Period size: 154 Copynumber: 10.4 Consensus size: 154
1 GCT
*
4 TTTTCTTTCCATTGTTTGTGGACTAACTATAATC-TTTTGGGTGAGATTAGTCCACTGTGAAGTT
1 TTTTCTTTCCATTGTTTATGGACTAACTATAATCATTTT-GGTGAGATTAGTCCACTGTGAAGTT
* * ** *
68 TTTAGCTCATTTGCAACACTTGTTATTTTGGGCTTATCGGGGCCCATTAGTTCTCGTTTTGAATA
65 TTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAG-TGACGTTTTGAATC
**
133 GTCTTCGATTTGGCAAACCTCAAAAC
129 GTCTTCGATTTGGCAAACCTCAATGC
* * *
159 TTTTCTTTCCATAT-TTTATGGACTAAATATAATCATTTTGGTGACATTATTCCACTGTGAAGTT
1 TTTTCTTTCCAT-TGTTTATGGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTT
* * *
223 TTTAGCTCATTTGCAACACTTGTTATTTTGGGCCTATCGAGGCCCATTGGTGACGTTTTGAATCG
65 TTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCG
*
288 TCTTCGATTTGGCAAACCTCAAGGC
130 TCTTCGATTTGGCAAACCTCAATGC
* * * * *
313 TTTTATTTCAATTTTTTATGGACTAACTATAATAATTTTGTTGAGATTAGTCCACTGTGAAGTTT
1 TTTTCTTTCCATTGTTTATGGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTT
* * *
378 TTAGCTCATTTGGAACACTTGTTATTTTGGGACTATCGAGGCCCATTGGTGACGTTTTGAATCGT
66 TTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGT
*
443 CTTCGATTTGGCAAACCTCAAGGC
131 CTTCGATTTGGCAAACCTCAATGC
*
467 TTTTCTTTCAATTGTTTATGGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTT
1 TTTTCTTTCCATTGTTTATGGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTT
* * * * *
532 TTCGCTTATTTGGAACACTTGTTCTTTTGGGCCTATCGAGGCCCATTGGTGACGTTTTGAATCGT
66 TTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGT
*
597 CTTCGATTTGGCAAACCTCAAGGC
131 CTTCGATTTGGCAAACCTCAATGC
* *
621 TTTTCTTTCAATTGTTTATGGACTAACTATAATTAATTTTGGTGAGATTAGTCCACTGTGAAGTT
1 TTTTCTTTCCATTGTTTATGGACTAACTATAA-TCATTTTGGTGAGATTAGTCCACTGTGAAGTT
* * * *
686 TTTCGATTATTTGGAACACTTGTTATTTTGGGCCTATCGTGGCCCATTAGTGACGTTTTGAATCG
65 TTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCG
*
751 ACTTCGATTTGGCAAACCTCAATGC
130 TCTTCGATTTGGCAAACCTCAATGC
*
776 TTTTCTTTCCATTGTTTATGGACTAACTGTAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTT
1 TTTTCTTTCCATTGTTTATGGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTT
* * * * * * *
841 TTAGCTCGTTTGGAACACTTGTTATTTTCGGCCTATCGGGTCCAATTAGTGACATATTGAATCCT
66 TTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGT
*
906 CTTCGATTTGGCAAACCTTAATGC
131 CTTCGATTTGGCAAACCTCAATGC
930 TTTTCTTTCCATTGTTTATGGACTAACTATAATC-TTTTGGGTGAGATTAGTCCACTGTGAAGTT
1 TTTTCTTTCCATTGTTTATGGACTAACTATAATCATTTT-GGTGAGATTAGTCCACTGTGAAGTT
* *
994 TTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACAGATTT-AGTC
65 TTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGAC-GTTTTGAATC
*
1058 CTCTTCGATTTGGCAAACCTCAATGC
129 GTCTTCGATTTGGCAAACCTCAATGC
* **
1084 TTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTAAACTGTGAAGTTT
1 TTTTCTTTCCATTGTTTATGGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTT
*
1149 TTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTTAATCGT
66 TTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGT
*
1214 CTTCGATTTGGCAAACCTCAATAC
131 CTTCGATTTGGCAAACCTCAATGC
* * * *
1238 TTTTCTTTCCATTGTTTATGAAGTAACTATAATCAGTTGGGTGAGATTAGTCCACTGTGAAGTTT
1 TTTTCTTTCCATTGTTTATGGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTT
* * * * *
1303 TTAGCTCATTTGCAACACTTGTTATTTTGGGCTTATCGGGGCCCATTAGT-TCTATTTTGAATTG
66 TTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGAC-GTTTTGAATCG
* **
1367 TTTTCGATTTGGCAAACCTCAAAAC
130 TCTTCGATTTGGCAAACCTCAATGC
* * * * *
1392 TTTTCTTTCCATAT-TTTATGGACTAAATATAATCATTTTTGTGACATTAGTCCACTATAAAGTT
1 TTTTCTTTCCAT-TGTTTATGGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTT
* * * * *
1456 TTTAGCTTATTTGGAACACTTATT-TTTTGGGCTTATAC-GGGCCCATTAGT-TCTATTTTGAAT
65 TTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTAT-CGGGGCCCATTAGTGAC-GTTTTGAAT
* * *
1518 AGTCTTCGATTTGGCAAACGTCAATGT
128 CGTCTTCGATTTGGCAAACCTCAATGC
* *
1545 TTTTCTTTCAATTGTTTATGGACTAACTATAATCATTTTGGTAAGATTAGTCCACTGTGAAGTTT
1 TTTTCTTTCCATTGTTTATGGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTT
1610 TT
66 TT
1612 CGCTTAGTTC
Statistics
Matches: 1332, Mismatches: 109, Indels: 26
0.91 0.07 0.02
Matches are distributed among these distances:
152 1 0.00
153 125 0.09
154 949 0.71
155 252 0.19
156 5 0.00
ACGTcount: A:0.23, C:0.17, G:0.19, T:0.41
Consensus pattern (154 bp):
TTTTCTTTCCATTGTTTATGGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTT
TTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGT
CTTCGATTTGGCAAACCTCAATGC
Found at i:903 original size:463 final size:462
Alignment explanation
Indices: 4--1611 Score: 2322
Period size: 463 Copynumber: 3.5 Consensus size: 462
1 GCT
*
4 TTTTCTTTCCATTGTTTGTGGACTAACTATAATCTTTTGGGTGAGATTAGTCCACTGTGAAGTTT
1 TTTTCTTTCCATTGTTTATGGACTAACTATAATCTTTTGGGTGAGATTAGTCCACTGTGAAGTTT
* * * *
69 TTAGCTCATTTGCAACACTTGTTATTTTGGGCTTATCGGGGCCCATTAGT-TCTCGTTTTGAATA
66 TTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGAC-AGTTTTGAATA
** * *
133 GTCTTCGATTTGGCAAACCTCAAAACTTTTCTTTCCATAT-TTTATGGACTAAATATAATCATTT
130 GTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCAAT-TGTTTATGGACTAACTATAATCATTT
* * *
197 TGGTGACATTATTCCACTGTGAAGTTTTTAGCTCATTTGCAACACTTGTTATTTTGGGCCTATCG
194 TGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCG
* * * * *
262 AGGCCCATTGGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAAGGCTTTTATTTCAATTT
259 AGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTG
* *
327 TTTATGGACTAACTATAATAATTTTGTTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGA
324 TTTATGGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGA
* * *
392 ACACTTGTTATTTTGGGACTATCGAGGCCCATTGGTGACGTTTTGAATCGTCTTCGATTTGGCAA
389 ACACTTGTTATTTTGGGCCTATCG-GGCCCATTAGTGACATTTTGAATCGTCTTCGATTTGGCAA
*
457 ACCTCAAGGC
453 ACCTCAAAGC
*
467 TTTTCTTTCAATTGTTTATGGACTAACTATAATCATTTT-GGTGAGATTAGTCCACTGTGAAGTT
1 TTTTCTTTCCATTGTTTATGGACTAACTATAATC-TTTTGGGTGAGATTAGTCCACTGTGAAGTT
* * * * * *
531 TTTCGCTTATTTGGAACACTTGTTCTTTTGGGCCTATCGAGGCCCATTGGTGAC-GTTTTGAATC
65 TTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACAGTTTTGAATA
* *
595 GTCTTCGATTTGGCAAACCTCAAGGCTTTTCTTTCAATTGTTTATGGACTAACTATAATTAATTT
130 GTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCAATTGTTTATGGACTAACTATAA-TCATTT
* * *
660 TGGTGAGATTAGTCCACTGTGAAGTTTTTCGATTATTTGGAACACTTGTTATTTTGGGCCTATCG
194 TGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCG
* *
725 TGGCCCATTAGTGACGTTTTGAATCGACTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTG
259 AGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTG
* *
790 TTTATGGACTAACTGTAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCGTTTGGA
324 TTTATGGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGA
* * * *
855 ACACTTGTTATTTTCGGCCTATCGGGTCCAATTAGTGACATATTGAATCCTCTTCGATTTGGCAA
389 ACACTTGTTATTTTGGGCCTATCGGG-CCCATTAGTGACATTTTGAATCGTCTTCGATTTGGCAA
* *
920 ACCTTAATGC
453 ACCTCAAAGC
930 TTTTCTTTCCATTGTTTATGGACTAACTATAATCTTTTGGGTGAGATTAGTCCACTGTGAAGTTT
1 TTTTCTTTCCATTGTTTATGGACTAACTATAATCTTTTGGGTGAGATTAGTCCACTGTGAAGTTT
* * **
995 TTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACAGATTT-AGTCC
66 TTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACAGTTTTGAATAG
* *
1059 TCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTG
131 TCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCAATTGTTTATGGACTAACTATAATCATTTTG
** *
1124 GTGAGATTAGTAAACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGG
196 GTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGAG
* *
1189 GCCCATTAGTGACGTTTTTAATCGTCTTCGATTTGGCAAACCTCAATACTTTTCTTTCCATTGTT
261 GCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTT
* * * * *
1254 TATGAAGTAACTATAATCAGTTGGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGCAAC
326 TATGGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAAC
* * * *
1319 ACTTGTTATTTTGGGCTTATCGGGGCCCATTAGT-TCTATTTTGAATTGTTTTCGATTTGGCAAA
391 ACTTGTTATTTTGGGCCTATC-GGGCCCATTAGTGAC-ATTTTGAATCGTCTTCGATTTGGCAAA
*
1383 CCTCAAAAC
454 CCTCAAAGC
* * * * *
1392 TTTTCTTTCCATAT-TTTATGGACTAAATATAATCATTTT-TGTGACATTAGTCCACTATAAAGT
1 TTTTCTTTCCAT-TGTTTATGGACTAACTATAATC-TTTTGGGTGAGATTAGTCCACTGTGAAGT
* * * *
1455 TTTTAGCTTATTTGGAACACTTATT-TTTTGGGCTTATAC-GGGCCCATTAGT-TCTA-TTTTGA
64 TTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTAT-CGGGGCCCATTAGTGAC-AGTTTTGA
* *
1516 ATAGTCTTCGATTTGGCAAACGTCAATGTTTTTCTTTCAATTGTTTATGGACTAACTATAATCAT
127 ATAGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCAATTGTTTATGGACTAACTATAATCAT
*
1581 TTTGGTAAGATTAGTCCACTGTGAAGTTTTT
192 TTTGGTGAGATTAGTCCACTGTGAAGTTTTT
1612 CGCTTAGTTC
Statistics
Matches: 1029, Mismatches: 102, Indels: 30
0.89 0.09 0.03
Matches are distributed among these distances:
460 4 0.00
461 113 0.11
462 384 0.37
463 519 0.50
464 9 0.01
ACGTcount: A:0.23, C:0.17, G:0.19, T:0.41
Consensus pattern (462 bp):
TTTTCTTTCCATTGTTTATGGACTAACTATAATCTTTTGGGTGAGATTAGTCCACTGTGAAGTTT
TTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACAGTTTTGAATAG
TCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCAATTGTTTATGGACTAACTATAATCATTTTG
GTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGAG
GCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTT
TATGGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAAC
ACTTGTTATTTTGGGCCTATCGGGCCCATTAGTGACATTTTGAATCGTCTTCGATTTGGCAAACC
TCAAAGC
Found at i:1709 original size:114 final size:114
Alignment explanation
Indices: 1501--1725 Score: 335
Period size: 114 Copynumber: 2.0 Consensus size: 114
1491 TACGGGCCCA
* * * *
1501 TTAGTTCTATTTTGAATAGTCTTCGATTTGGCAAACGTCAATGTTTTTCTTTCAATTGTTTATGG
1 TTAGTTCCATTTTGAATAGTCTACGATTTGGCAAACGTCAATGCTTTTCTTTCAATTGATTATGG
*
1566 ACTAACTATAATCATTTTGGTAAGATTAGTCCACTGTGAAGTTTTTCGC
66 ACTAACTATAATCATTTTGGTAAGATTAGTCCACTATGAAGTTTTTCGC
* * * *
1615 TTAGTTCCGTTTTGAATCGTCTACGATTTGGCAAA-GCTCAATGCTTTTCTTTCCATTGATTGTG
1 TTAGTTCCATTTTGAATAGTCTACGATTTGGCAAACG-TCAATGCTTTTCTTTCAATTGATTATG
* *
1679 GACTAACTATAATCATTTTGGTGAGTTTAGTCCACTATGAAGTTTTT
65 GACTAACTATAATCATTTTGGTAAGATTAGTCCACTATGAAGTTTTT
1726 AGCTCATTTG
Statistics
Matches: 99, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
113 1 0.01
114 98 0.99
ACGTcount: A:0.24, C:0.15, G:0.17, T:0.44
Consensus pattern (114 bp):
TTAGTTCCATTTTGAATAGTCTACGATTTGGCAAACGTCAATGCTTTTCTTTCAATTGATTATGG
ACTAACTATAATCATTTTGGTAAGATTAGTCCACTATGAAGTTTTTCGC
Found at i:1874 original size:268 final size:267
Alignment explanation
Indices: 1348--1875 Score: 720
Period size: 267 Copynumber: 2.0 Consensus size: 267
1338 TCGGGGCCCA
* * * * *
1348 TTAGTTCTATTTTGAATTGTTTTCGATTTGGCAAACCTCAAAACTTTTCTTTCCATATTTTATGG
1 TTAGTTCCATTTTGAATCGTCTACGATTTGGCAAACCTCAAAACTTTTCTTTCCATATATTATGG
* * *
1413 ACTAAATATAATCATTTTTGTGACATTAGTCCACTATAAAGTTTTTAGCTTATTTGGAACACTTA
66 ACTAAATATAATCATTTTGGTGACATTAGTCCACTATAAAGTTTTTAGCTCATTTGGAACAATTA
* * ** * *
1478 TTTTTTGGGCTTATACGGGCCCATTAGTTCTATTTTGAATAGTCTTCGATTTGGCAAACGTCAAT
131 TTTTTTGGGCCTATACGGGCCCATTAGTACTACATTGAATACTCTTCGATTTGGCAAACATCAAT
* **
1543 GTTTTTCTTTCAATTGTTTATGGACTAACTATAATCATTTTGGTAAGATTAGTCCACTGTGAAGT
196 GCTTTTCTTTCAATTGTTTATGGACTAACTATAATCATTTTGGTAAGATTAGTAAACTGTGAAGT
1608 TTTTCGC
261 TTTTCGC
* * ** *
1615 TTAGTTCCGTTTTGAATCGTCTACGATTTGGCAAAGCTCAATGCTTTTCTTTCCAT-TGATTGTG
1 TTAGTTCCATTTTGAATCGTCTACGATTTGGCAAACCTCAAAACTTTTCTTTCCATAT-ATTATG
* ** *
1679 GACTAACTATAATCATTTTGGTGAGTTTAGTCCACTATGAAGTTTTTAGCTCATTTGGAACAATT
65 GACTAAATATAATCATTTTGGTGACATTAGTCCACTATAAAGTTTTTAGCTCATTTGGAACAATT
* *
1744 GTTATTTTGGGCCTAT-CGGGGCCCATTAGTGAC-ACATTGAATCCTCTTCGATTTGGCAAACAT
130 ATT-TTTTGGGCCTATAC-GGGCCCATTAGT-ACTACATTGAATACTCTTCGATTTGGCAAACAT
* * *
1807 CAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTTAGATTAGTAAACTGTG
192 CAATGCTTTTCTTTCAATTGTTTATGGACTAACTATAATCATTTTGGTAAGATTAGTAAACTGTG
1872 AAGT
257 AAGT
1876 CTTTAGATCA
Statistics
Matches: 226, Mismatches: 31, Indels: 7
0.86 0.12 0.03
Matches are distributed among these distances:
266 1 0.00
267 113 0.50
268 111 0.49
269 1 0.00
ACGTcount: A:0.25, C:0.16, G:0.17, T:0.42
Consensus pattern (267 bp):
TTAGTTCCATTTTGAATCGTCTACGATTTGGCAAACCTCAAAACTTTTCTTTCCATATATTATGG
ACTAAATATAATCATTTTGGTGACATTAGTCCACTATAAAGTTTTTAGCTCATTTGGAACAATTA
TTTTTTGGGCCTATACGGGCCCATTAGTACTACATTGAATACTCTTCGATTTGGCAAACATCAAT
GCTTTTCTTTCAATTGTTTATGGACTAACTATAATCATTTTGGTAAGATTAGTAAACTGTGAAGT
TTTTCGC
Found at i:1900 original size:154 final size:154
Alignment explanation
Indices: 1622--2941 Score: 1898
Period size: 154 Copynumber: 8.6 Consensus size: 154
1612 CGCTTAGTTC
* * * *
1622 CGTTTTGAATCGTCTACGATTTGGCAAAGCTCAATGCTTTTCTTTCCATTGATTGTGGACTAACT
1 CGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGACTAACT
* * *
1687 ATAATCATTTTGGTGAGTTTAGTCCACTATGAAGTTTTTAGCTCATTTGGAACAATTGTTATTTT
66 ATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTT
1752 GGGCCTATCGGGGCCCATTAGTGA
131 GGGCCTATCGGGGCCCATTAGTGA
*** * * *
1776 CACATTGAATCCTCTTCGATTTGGCAAACATCAATGCTTTTCTTTCCATTGTTTATGGCCTAACT
1 CGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGACTAACT
* ** * * *
1841 ATAATCATTTTGGTTAGATTAGTAAACTGTGAAGTCTTTAGATCATTTGGAACACTTGTTATTAT
66 ATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTT
1906 GGGCCTATCGGGGCCCATTAGTGA
131 GGGCCTATCGGGGCCCATTAGTGA
* * *
1930 CGTTTTTAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTTTTTCCATTGTTTATGGCCTAACT
1 CGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGACTAACT
* * *
1995 ATAATCATTTTGATCAGATTAGTCCACTGTGAAGTTTTTAGATCATTTGGAACACTTGTTATTTT
66 ATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTT
*
2060 GGGCCTGTCGGGGCCCATTAGTGA
131 GGGCCTATCGGGGCCCATTAGTGA
* * * **
2084 CATATTGAATCATCTTCGATTTGGCAAACCTCAACACTTTTCTTTCCATTGTTTATGGACTAACT
1 CGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGACTAACT
* * * *
2149 ATAATCAGTTGGGTGAGATTAGTCCACTGTGAAGTTTTTATCTCATTTGCAACACTTGTTATTTT
66 ATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTT
* *
2214 GGGCTTATCGGGGCCCATTAGT-T
131 GGGCCTATCGGGGCCCATTAGTGA
* *
2237 CTGTTTTGAATAGTCTTCGATTTGGCAAACCTCTAA-ACTTTAT-TTTCCATAT-TTTATGGACT
1 C-GTTTTGAATCGTCTTCGATTTGGCAAACCTC-AATGCTTT-TCTTTCCAT-TGTTTATGGACT
* *
2299 AAATATAATCATTTTGGTGACATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTA
62 AACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTA
* **
2364 TTTTGGGCCTTTCGGGGCCCATTAGTTC
127 TTTTGGGCCTATCGGGGCCCATTAGTGA
* *
2392 CGTTTTGAATCGTCTTCG-TGTTGGCAAACCTCAATGCTTTTCTTTCCATTGGTTAGGGACTAAC
1 CGTTTTGAATCGTCTTCGAT-TTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGACTAAC
* * *
2456 TATAATCATTTTGGTAAGATTAGTCCACTGTAAAGTTTTTAGCTCATTTGGAACACATGTTATTT
65 TATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTT
* *
2521 TGGCCCTATCGAGGCCCATTAGTGA
130 TGGGCCTATCGGGGCCCATTAGTGA
*
2546 CGTTTTGAATCGTCTTCGATTTGGCAAACCTTAATGCTTTTCTTTCCATTGTTTATGGACTAACT
1 CGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGACTAACT
*
2611 ATAATC-TTTTGGGTCAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTT
66 ATAATCATTTT-GGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTT
*
2675 TGGGCCTATCGAGGCCCATTAGTGA
130 TGGGCCTATCGGGGCCCATTAGTGA
* * * * *
2700 CAGATTT-AGTCCTATTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAAC
1 C-GTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGACTAAC
**
2764 TATAATCATTTTGGTGAGATTAGTAAACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTT
65 TATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTT
* * **
2829 TGTGCCTTTCGGGGCCCATTAGTTC
130 TGGGCCTATCGGGGCCCATTAGTGA
* * * *
2854 CGTTTTGAATTGTCTTCGATTTGGCAAACCTCATTGCTTTTCTTTCCATTGGTTAGGGACTAACT
1 CGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGACTAACT
*
2919 ATAATCATTTTGGTAAGATTAGT
66 ATAATCATTTTGGTGAGATTAGT
Statistics
Matches: 1043, Mismatches: 109, Indels: 28
0.88 0.09 0.02
Matches are distributed among these distances:
153 14 0.01
154 1015 0.97
155 14 0.01
ACGTcount: A:0.23, C:0.18, G:0.19, T:0.40
Consensus pattern (154 bp):
CGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGACTAACT
ATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTT
GGGCCTATCGGGGCCCATTAGTGA
Done.