Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019885.1 Corchorus olitorius cultivar O-4 contig19918, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2589
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:1435 original size:21 final size:22

Alignment explanation


    Indices: 1410--1454  Score: 65
    Period size: 21  Copynumber: 2.1  Consensus size: 22

       1400 CGTGACACTG

                 *     *          
       1410 CCCACCTGGGTTCTCAA-GCAA
          1 CCCACATGGGTGCTCAAGGCAA

                                  
       1431 CCCACATGGGTGCTCAAGGCAA
          1 CCCACATGGGTGCTCAAGGCAA

              
       1453 CC
          1 CC

       1455 ATGTGGGCAC


Statistics
Matches: 21,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
  21   15  0.71
  22    6  0.29

ACGTcount: A:0.24, C:0.38, G:0.22, T:0.16


Consensus pattern (22 bp):   
CCCACATGGGTGCTCAAGGCAA
Done.