Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019886.1 Corchorus olitorius cultivar O-4 contig19919, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59551

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10837--10887
24
2.0
24
85
7
66
41
11
15
31
1.83
15669--15698
8
3.6
8
91
8
51
33
3
23
40
1.71
17065--17106
15
2.7
15
96
3
75
11
7
14
66
1.43
24436--24486
19
2.7
19
77
14
61
47
0
1
50
1.12
26673--26764
47
2.0
47
84
4
123
51
6
16
26
1.68
29367--29426
15
4.1
14
77
10
57
15
23
23
38
1.92
29368--29430
30
2.1
30
84
0
81
14
25
22
38
1.92
30656--30725
18
3.9
18
86
0
95
12
18
40
28
1.88
31260--31389
49
2.7
47
84
8
163
49
6
14
29
1.69
34606--34636
15
2.1
15
100
0
62
19
12
19
48
1.81
41514--41544
15
2.1
15
93
0
53
64
12
9
12
1.50
42317--42342
11
2.4
11
100
0
52
69
7
15
7
1.35
44122--44206
29
2.8
30
82
8
111
20
29
16
34
1.94
44709--44929
69
3.2
69
70
22
219
16
5
28
49
1.69
45623--45664
9
4.7
9
87
0
66
45
0
35
19
1.50
45623--45664
18
2.3
18
95
0
75
45
0
35
19
1.50
45651--45716
24
2.8
24
81
9
64
36
4
36
22
1.75
54975--55043
2
38.5
2
73
21
64
46
1
0
52
1.09
54980--55048
19
4.2
18
78
19
71
47
1
0
50
1.09
54975--55043
17
4.3
17
84
10
76
46
1
0
52
1.09
57254--57520
130
2.0
131
85
3
360
37
11
3
48
1.56
59450--59491
21
1.9
22
90
9
68
76
2
4
16
1.07

Tables:   1

The End!