Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01019887.1 Corchorus olitorius cultivar O-4 contig19920, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63979
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33
Found at i:6677 original size:2 final size:2
Alignment explanation
Indices: 6670--6696 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
6660 TGAAACGAAA
6670 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
6697 CACTACATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:6737 original size:29 final size:29
Alignment explanation
Indices: 6704--6762 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
6694 ATACACTACA
6704 TATAAAAGTACGAATAAGAAACTTTATGT
1 TATAAAAGTACGAATAAGAAACTTTATGT
6733 TATAAAAGTACGAATAAGAAACTTTATGT
1 TATAAAAGTACGAATAAGAAACTTTATGT
6762 T
1 T
6763 TTCCAATTGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.47, C:0.07, G:0.14, T:0.32
Consensus pattern (29 bp):
TATAAAAGTACGAATAAGAAACTTTATGT
Found at i:7514 original size:8 final size:8
Alignment explanation
Indices: 7494--7530 Score: 65
Period size: 8 Copynumber: 4.5 Consensus size: 8
7484 CTTTTATGTT
7494 TTATATATA
1 TTATAT-TA
7503 TTATATTA
1 TTATATTA
7511 TTATATTA
1 TTATATTA
7519 TTATATTA
1 TTATATTA
7527 TTAT
1 TTAT
7531 TGGCCAACCC
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
8 22 0.79
9 6 0.21
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
TTATATTA
Found at i:8714 original size:2 final size:2
Alignment explanation
Indices: 8707--8750 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
8697 GGAGTAGTTC
8707 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8749 TA
1 TA
8751 GTGTGTGCCT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:9617 original size:21 final size:22
Alignment explanation
Indices: 9576--9762 Score: 109
Period size: 22 Copynumber: 8.5 Consensus size: 22
9566 GGGAGATTAA
* * *
9576 CAAAATCTCACAGGGAGGTTAT
1 CAAAATTTCATAGGAAGGTTAT
*
9598 CAAAA-ATCATAGGAAGGTTA-
1 CAAAATTTCATAGGAAGGTTAT
9618 CAAAATTTCATAGGAAGGTTTAT
1 CAAAATTTCATAGGAAGG-TTAT
* **
9641 TAAAATTTCATAGTTAGGTTAT
1 CAAAATTTCATAGGAAGGTTAT
* * *
9663 CAAAGTTTTATATGG-AGTTTA-
1 CAAAATTTCATA-GGAAGGTTAT
* * * *
9684 CAACAACTTCACATGTAA-ATTAT
1 CAA-AATTTCATA-GGAAGGTTAT
* *
9707 CTAAATTTCATAGCG-TGGTTAT
1 CAAAATTTCATAG-GAAGGTTAT
* *
9729 CAAAATTTAATAGGGTA-GTTAT
1 CAAAATTTCATA-GGAAGGTTAT
9751 CAAAATTTCATA
1 CAAAATTTCATA
9763 AAAATATTCA
Statistics
Matches: 126, Mismatches: 28, Indels: 22
0.72 0.16 0.12
Matches are distributed among these distances:
20 5 0.04
21 27 0.21
22 74 0.59
23 20 0.16
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.34
Consensus pattern (22 bp):
CAAAATTTCATAGGAAGGTTAT
Found at i:9637 original size:42 final size:43
Alignment explanation
Indices: 9556--9637 Score: 103
Period size: 42 Copynumber: 1.9 Consensus size: 43
9546 ATAGTATCAA
* * *
9556 AAAAATTATAGGGAGATTAACAAAATCTCACAGGGAGGTTATC
1 AAAAATCATAGGAAGATTAACAAAATCTCACAGGAAGGTTATC
* * *
9599 AAAAATCATAGGAAGGTT-ACAAAATTTCATAGGAAGGTT
1 AAAAATCATAGGAAGATTAACAAAATCTCACAGGAAGGTT
9638 TATTAAAATT
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
42 18 0.55
43 15 0.45
ACGTcount: A:0.45, C:0.10, G:0.21, T:0.24
Consensus pattern (43 bp):
AAAAATCATAGGAAGATTAACAAAATCTCACAGGAAGGTTATC
Found at i:9649 original size:23 final size:21
Alignment explanation
Indices: 9575--9653 Score: 79
Period size: 21 Copynumber: 3.7 Consensus size: 21
9565 AGGGAGATTA
* * *
9575 ACAAAATCTCACAGGGAGGTT
1 ACAAAATTTCATAGGAAGGTT
*
9596 ATCAAAA-ATCATAGGAAGGTT
1 A-CAAAATTTCATAGGAAGGTT
9617 ACAAAATTTCATAGGAAGGTTT
1 ACAAAATTTCATAGGAAGG-TT
*
9639 ATTAAAATTTCATAG
1 A-CAAAATTTCATAG
9654 TTAGGTTATC
Statistics
Matches: 49, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
20 5 0.10
21 24 0.49
22 8 0.16
23 12 0.24
ACGTcount: A:0.43, C:0.11, G:0.18, T:0.28
Consensus pattern (21 bp):
ACAAAATTTCATAGGAAGGTT
Found at i:9920 original size:15 final size:15
Alignment explanation
Indices: 9902--9967 Score: 55
Period size: 15 Copynumber: 4.5 Consensus size: 15
9892 CAAAATTTTT
9902 AAATTCAATAATTTG
1 AAATTCAATAATTTG
* **
9917 AAATTC-TTTGTTTGG
1 AAATTCAATAATTT-G
*
9932 AAATT-AGTAATTTG
1 AAATTCAATAATTTG
* *
9946 AAATTCTATAATTTC
1 AAATTCAATAATTTG
9961 AAATTCA
1 AAATTCA
9968 TTGTTTGGAT
Statistics
Matches: 38, Mismatches: 10, Indels: 6
0.70 0.19 0.11
Matches are distributed among these distances:
14 10 0.26
15 28 0.74
ACGTcount: A:0.39, C:0.08, G:0.09, T:0.44
Consensus pattern (15 bp):
AAATTCAATAATTTG
Found at i:9964 original size:29 final size:29
Alignment explanation
Indices: 9910--9965 Score: 69
Period size: 29 Copynumber: 1.9 Consensus size: 29
9900 TTAAATTCAA
** *
9910 TAATTTGAAATTCTTTGTTTGGAAATTAG
1 TAATTTGAAATTCTTAATTTGCAAATTAG
9939 TAATTTGAAATTCTATAATTT-CAAATT
1 TAATTTGAAATTCT-TAATTTGCAAATT
9966 CATTGTTTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
29 19 0.83
30 4 0.17
ACGTcount: A:0.36, C:0.05, G:0.11, T:0.48
Consensus pattern (29 bp):
TAATTTGAAATTCTTAATTTGCAAATTAG
Found at i:9989 original size:44 final size:44
Alignment explanation
Indices: 9902--9989 Score: 106
Period size: 44 Copynumber: 2.0 Consensus size: 44
9892 CAAAATTTTT
* * * *
9902 AAATTCAATAATTTGAAATTCTTTGTTTGGAAATTAGTAATTTG
1 AAATTCAATAATTTCAAATTCATTGTTTGGAAACTAATAATTTG
* *
9946 AAATTCTATAATTTCAAATTCATTGTTTGGATGACTAAT-ATTTG
1 AAATTCAATAATTTCAAATTCATTGTTTGGA-AACTAATAATTTG
9990 GATTTGGATT
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
44 33 0.89
45 4 0.11
ACGTcount: A:0.35, C:0.07, G:0.12, T:0.45
Consensus pattern (44 bp):
AAATTCAATAATTTCAAATTCATTGTTTGGAAACTAATAATTTG
Found at i:15233 original size:57 final size:57
Alignment explanation
Indices: 15170--15282 Score: 172
Period size: 57 Copynumber: 2.0 Consensus size: 57
15160 CCATCATTTT
**
15170 TTTTGGTTTGGTATCCCATCCGGTATCCAGGGATTCGCCCTAACTAATCCGGATCCA
1 TTTTGGTTTGGTATCCCAAACGGTATCCAGGGATTCGCCCTAACTAATCCGGATCCA
* * * *
15227 TTTTGGTTTGGTATCCCAAATGGTATCCAGGGCTTTGCCCTGACTAATCCGGATCC
1 TTTTGGTTTGGTATCCCAAACGGTATCCAGGGATTCGCCCTAACTAATCCGGATCC
15283 GACCCGCGTC
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
57 50 1.00
ACGTcount: A:0.19, C:0.27, G:0.22, T:0.33
Consensus pattern (57 bp):
TTTTGGTTTGGTATCCCAAACGGTATCCAGGGATTCGCCCTAACTAATCCGGATCCA
Found at i:27160 original size:3 final size:3
Alignment explanation
Indices: 27154--27190 Score: 53
Period size: 3 Copynumber: 13.3 Consensus size: 3
27144 GGGTTTTATT
27154 ATA ATA ATA ATA AT- ATA AT- ATA AT- ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
27191 CAAGGACAAC
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
2 6 0.19
3 25 0.81
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:29874 original size:15 final size:15
Alignment explanation
Indices: 29854--29885 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
29844 AAGGGCCGAC
*
29854 AGTGAATGAAAAGGT
1 AGTGAACGAAAAGGT
29869 AGTGAACGAAAAGGT
1 AGTGAACGAAAAGGT
29884 AG
1 AG
29886 CAAACATCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.47, C:0.03, G:0.34, T:0.16
Consensus pattern (15 bp):
AGTGAACGAAAAGGT
Found at i:33726 original size:43 final size:43
Alignment explanation
Indices: 33633--33719 Score: 165
Period size: 43 Copynumber: 2.0 Consensus size: 43
33623 AGAAAGTGAT
33633 GGATGTTGACCCTAATTTCAATCCCTTTATTTGATCTGCTGGC
1 GGATGTTGACCCTAATTTCAATCCCTTTATTTGATCTGCTGGC
*
33676 GGATGTTGACCCTAATTTCAATCTCTTTATTTGATCTGCTGGC
1 GGATGTTGACCCTAATTTCAATCCCTTTATTTGATCTGCTGGC
33719 G
1 G
33720 CGTGTTGCCC
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.18, C:0.22, G:0.20, T:0.40
Consensus pattern (43 bp):
GGATGTTGACCCTAATTTCAATCCCTTTATTTGATCTGCTGGC
Found at i:33758 original size:15 final size:15
Alignment explanation
Indices: 33734--33777 Score: 63
Period size: 15 Copynumber: 2.9 Consensus size: 15
33724 TTGCCCACGT
33734 GGGAAGGAAAGAAGAG
1 GGGAAGGAAAGAA-AG
33750 GGG-AGGAAAGAAAG
1 GGGAAGGAAAGAAAG
*
33764 GGGAAGGAAGGAAA
1 GGGAAGGAAAGAAA
33778 AGACTTCTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
14 5 0.19
15 18 0.69
16 3 0.12
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (15 bp):
GGGAAGGAAAGAAAG
Found at i:36795 original size:27 final size:27
Alignment explanation
Indices: 36755--36819 Score: 103
Period size: 27 Copynumber: 2.4 Consensus size: 27
36745 AGAAATCTAC
** *
36755 TTGATTTATTTTGGTTATATTTTGTAA
1 TTGATTTAGATTGGTCATATTTTGTAA
36782 TTGATTTAGATTGGTCATATTTTGTAA
1 TTGATTTAGATTGGTCATATTTTGTAA
36809 TTGATTTAGAT
1 TTGATTTAGAT
36820 GACATTTTGT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.25, C:0.02, G:0.17, T:0.57
Consensus pattern (27 bp):
TTGATTTAGATTGGTCATATTTTGTAA
Found at i:37554 original size:16 final size:16
Alignment explanation
Indices: 37533--37585 Score: 61
Period size: 16 Copynumber: 3.2 Consensus size: 16
37523 TATGACTTCC
37533 TTTCCCTTCCTTCCTA
1 TTTCCCTTCCTTCCTA
**
37549 TTTCCCTTCCCTTGTTA
1 TTTCCCTT-CCTTCCTA
* *
37566 TTTCCTTTCCTCCCTA
1 TTTCCCTTCCTTCCTA
37582 TTTC
1 TTTC
37586 TTTCCTCTCA
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
16 17 0.57
17 13 0.43
ACGTcount: A:0.06, C:0.40, G:0.02, T:0.53
Consensus pattern (16 bp):
TTTCCCTTCCTTCCTA
Found at i:39807 original size:2 final size:2
Alignment explanation
Indices: 39794--39869 Score: 81
Period size: 2 Copynumber: 40.0 Consensus size: 2
39784 TGTTACATTG
*
39794 AT AT AC AT AT AT AT AT A- AT AT AT AT AT AT -T AT -T AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* *
39833 AT AT AT -T AT AT AT AT GT AT AT CT ACT AT -T AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT AT
39870 TATTACTATC
Statistics
Matches: 62, Mismatches: 6, Indels: 12
0.77 0.08 0.15
Matches are distributed among these distances:
1 5 0.08
2 55 0.89
3 2 0.03
ACGTcount: A:0.45, C:0.04, G:0.01, T:0.50
Consensus pattern (2 bp):
AT
Found at i:39838 original size:31 final size:32
Alignment explanation
Indices: 39800--39872 Score: 100
Period size: 31 Copynumber: 2.4 Consensus size: 32
39790 ATTGATATAC
*
39800 ATATATATA-TA-ATATATATATAT-TATTAT
1 ATATATATATTATATATATATATATCTACTAT
*
39829 ATATATATATTATATATATGTATATCTACTAT
1 ATATATATATTATATATATATATATCTACTAT
39861 -TATATATATTAT
1 ATATATATATTAT
39873 TACTATCTAA
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
29 9 0.23
30 2 0.05
31 23 0.59
32 5 0.13
ACGTcount: A:0.44, C:0.03, G:0.01, T:0.52
Consensus pattern (32 bp):
ATATATATATTATATATATATATATCTACTAT
Found at i:39843 original size:29 final size:30
Alignment explanation
Indices: 39800--39872 Score: 96
Period size: 29 Copynumber: 2.4 Consensus size: 30
39790 ATTGATATAC
*
39800 ATATATATATAATATATATATATTAT-TA-T
1 ATATATATATTATATATATATA-TATCTACT
*
39829 ATATATATATTATATATATGTATATCTACT
1 ATATATATATTATATATATATATATCTACT
39859 ATTATATATATTAT
1 A-TATATATATTAT
39873 TACTATCTAA
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
28 3 0.08
29 22 0.56
30 2 0.05
31 12 0.31
ACGTcount: A:0.44, C:0.03, G:0.01, T:0.52
Consensus pattern (30 bp):
ATATATATATTATATATATATATATCTACT
Found at i:40057 original size:13 final size:13
Alignment explanation
Indices: 40039--40064 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
40029 TCATGGGCGC
40039 ATCGACCTATTGT
1 ATCGACCTATTGT
40052 ATCGACCTATTGT
1 ATCGACCTATTGT
40065 TAATGCAGAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.38
Consensus pattern (13 bp):
ATCGACCTATTGT
Found at i:42080 original size:2 final size:2
Alignment explanation
Indices: 42073--42114 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
42063 CTTTACGTTG
42073 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
42115 GATCATTAGC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:44850 original size:37 final size:37
Alignment explanation
Indices: 44804--44913 Score: 184
Period size: 37 Copynumber: 3.0 Consensus size: 37
44794 AAATCATCGA
* * *
44804 CAAGACCCACTAGAATTTAACAATCCACTACAAAATC
1 CAAGGCCCACTACAATTTAACATTCCACTACAAAATC
*
44841 CAAGGCCCACTACAATTTAACATTCCACTCCAAAATC
1 CAAGGCCCACTACAATTTAACATTCCACTACAAAATC
44878 CAAGGCCCACTACAATTTAACATTCCACTACAAAAT
1 CAAGGCCCACTACAATTTAACATTCCACTACAAAAT
44914 TCAGCTTCAA
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.42, C:0.32, G:0.05, T:0.21
Consensus pattern (37 bp):
CAAGGCCCACTACAATTTAACATTCCACTACAAAATC
Found at i:46665 original size:27 final size:27
Alignment explanation
Indices: 46619--46670 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
46609 GAACTTGGCT
*
46619 TCAATGTTCGGGCCACGTCCAATTCCA
1 TCAATGTTCGGCCCACGTCCAATTCCA
*
46646 TCAATGTTCGGCCCAGGTCCAATTC
1 TCAATGTTCGGCCCACGTCCAATTC
46671 ATTTTGCCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.21, C:0.33, G:0.19, T:0.27
Consensus pattern (27 bp):
TCAATGTTCGGCCCACGTCCAATTCCA
Found at i:47255 original size:21 final size:21
Alignment explanation
Indices: 47231--47270 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
47221 TTGACCATTT
47231 TTCTCTCTCCACATTTACACC
1 TTCTCTCTCCACATTTACACC
*
47252 TTCTCTCTCCATATTTACA
1 TTCTCTCTCCACATTTACA
47271 TCTAACCGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.38, G:0.00, T:0.42
Consensus pattern (21 bp):
TTCTCTCTCCACATTTACACC
Found at i:48047 original size:66 final size:66
Alignment explanation
Indices: 47941--48075 Score: 225
Period size: 66 Copynumber: 2.0 Consensus size: 66
47931 GTTACTTTTA
* *
47941 AAACACAAACTGAAATCAGAAAAAGCGCTGCTTCTTGACCATATATACGATCAAATGTGCTATGA
1 AAACACAAACAGAAATCAGAAAAAGCGCTGCTTCTTGACCATATATACGATCAAATCTGCTATGA
48006 G
66 G
* * *
48007 AAACACAAACAGAAATCAGAAAAAGCTCTGCTTCTTGACCATATATATGGTCAAATCTGCTATGA
1 AAACACAAACAGAAATCAGAAAAAGCGCTGCTTCTTGACCATATATACGATCAAATCTGCTATGA
48072 G
66 G
48073 AAA
1 AAA
48076 GTGGATAAAG
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
66 64 1.00
ACGTcount: A:0.42, C:0.19, G:0.16, T:0.23
Consensus pattern (66 bp):
AAACACAAACAGAAATCAGAAAAAGCGCTGCTTCTTGACCATATATACGATCAAATCTGCTATGA
G
Found at i:61807 original size:11 final size:11
Alignment explanation
Indices: 61791--61816 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
61781 CTAGTTGGAA
61791 AATCCAAAGAC
1 AATCCAAAGAC
61802 AATCCAAAGAC
1 AATCCAAAGAC
61813 AATC
1 AATC
61817 AAGAAAGACT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.54, C:0.27, G:0.08, T:0.12
Consensus pattern (11 bp):
AATCCAAAGAC
Found at i:63860 original size:10 final size:10
Alignment explanation
Indices: 63837--63866 Score: 51
Period size: 10 Copynumber: 2.9 Consensus size: 10
63827 GATTGAAAAT
63837 GAAGAAAGGAA
1 GAAGAAA-GAA
63848 GAAGAAAGAA
1 GAAGAAAGAA
63858 GAAGAAAGA
1 GAAGAAAGA
63867 GGCGGAGGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 12 0.63
11 7 0.37
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (10 bp):
GAAGAAAGAA
Done.