Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019891.1 Corchorus olitorius cultivar O-4 contig19924, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36001

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2412--2446
16
2.2
16
90
10
54
45
28
0
25
1.54
4879--5092
75
2.9
74
81
10
280
22
21
19
35
1.96
5054--5299
116
2.2
110
88
4
366
21
21
22
33
1.97
5757--5823
28
2.4
28
89
0
98
22
14
26
35
1.93
5757--5814
14
4.1
14
95
0
98
20
15
29
34
1.94
5943--6008
19
3.3
19
70
15
60
21
18
33
27
1.96
5954--6020
23
3.1
22
70
16
68
26
19
28
25
1.99
5935--6020
42
2.0
42
93
0
145
24
19
30
25
1.98
6169--6362
44
4.5
43
74
18
165
27
22
18
31
1.97
6214--6359
78
1.9
78
94
5
260
27
21
19
32
1.97
6352--6412
30
2.0
30
90
6
97
21
31
19
27
1.97
6399--6566
51
3.3
51
82
3
185
25
25
12
36
1.91
6575--6662
31
2.8
32
85
1
115
26
22
17
34
1.96
6817--6982
72
2.3
72
94
0
287
22
23
23
30
1.99
6817--6983
36
4.6
36
82
0
208
22
23
23
30
1.99
7145--7416
46
6.0
46
88
3
381
31
22
15
30
1.95
7689--7761
12
6.7
11
70
16
55
43
0
1
54
1.08
8299--8394
45
2.1
45
88
7
142
40
19
17
21
1.91
12879--12975
41
2.4
41
91
0
149
35
11
26
26
1.90
14970--15018
26
2.0
25
84
11
66
26
26
0
46
1.53
17453--17488
18
2.0
18
94
0
63
22
11
2
63
1.39
17690--17720
10
3.1
10
95
0
53
19
0
16
64
1.29
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
21205--21247
15
2.8
15
92
3
68
58
11
0
30
1.34
21204--21247
16
2.8
15
86
6
61
59
11
0
29
1.32
23731--23796
20
3.1
21
68
14
55
16
7
6
69
1.32
23733--23780
24
2.0
25
83
4
62
16
6
6
70
1.28
23761--23793
17
1.9
17
93
0
57
9
9
6
75
1.18
25452--25499
24
2.0
25
83
4
62
16
6
6
70
1.28
25658--25723
32
2.1
32
100
0
132
3
22
3
71
1.14
25669--25724
18
3.3
18
66
19
57
1
19
3
75
1.05
26090--26147
29
2.0
29
100
0
116
3
34
10
51
1.53
26936--27027
45
2.0
45
100
0
184
19
19
9
51
1.74
35152--35203
27
1.9
26
88
4
68
21
13
11
53
1.70
35052--35450
143
2.8
141
93
3
646
36
9
6
48
1.60
35320--35541
115
1.9
113
85
7
306
36
11
4
47
1.60
35513--35560
15
2.9
16
84
12
53
41
4
2
52
1.32
35510--35560
18
2.8
17
85
8
57
41
3
1
52
1.31

Tables:   1

The End!