Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019897.1 Corchorus olitorius cultivar O-4 contig19930, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1718
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.25


Found at i:1389 original size:34 final size:37

Alignment explanation


    Indices: 1351--1420  Score: 92
    Period size: 37  Copynumber: 1.9  Consensus size: 37

       1341 TCCGCGCCAA

                                                 
       1351 GCAGCA-A-GCCGCTGCTGCTGCCT-AGCCCGCGCGC
          1 GCAGCACAGGCCGCTGCTGCTGCCTCAGCCCGCGCGC

                       *                 *      
       1385 GCAGCAGCAGGTCGCTGCTGCTGCCTCAGTCCGCGC
          1 GCAGCA-CAGGCCGCTGCTGCTGCCTCAGCCCGCGC

       1421 ACAAGGCAGC


Statistics
Matches: 30,  Mismatches: 2, Indels: 4
        0.83            0.06        0.11

Matches are distributed among these distances:
  34    6  0.20
  36    1  0.03
  37   15  0.50
  38    8  0.27

ACGTcount: A:0.11, C:0.41, G:0.33, T:0.14


Consensus pattern (37 bp):   
GCAGCACAGGCCGCTGCTGCTGCCTCAGCCCGCGCGC
Done.