Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019898.1 Corchorus olitorius cultivar O-4 contig19931, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1844
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.32


Found at i:522 original size:27 final size:28

Alignment explanation


    Indices: 479--543  Score: 78
    Period size: 27  Copynumber: 2.4  Consensus size: 28

        469 TTTTTAGAAA

                                * *     
        479 AAAAAAAAAAGAGTTTTTGCGTTA-TAT
          1 AAAAAAAAAAGAGTTTTTGCATCATTAT

                       **             * 
        506 AAAAAAAAAAGTTTTTTTGCATCATTTT
          1 AAAAAAAAAAGAGTTTTTGCATCATTAT

                      
        534 AAAAAAAAAA
          1 AAAAAAAAAA

        544 AATTCTGCGT


Statistics
Matches: 32,  Mismatches: 5, Indels: 1
        0.84            0.13        0.03

Matches are distributed among these distances:
  27   20  0.62
  28   12  0.38

ACGTcount: A:0.54, C:0.05, G:0.09, T:0.32


Consensus pattern (28 bp):   
AAAAAAAAAAGAGTTTTTGCATCATTAT
Done.