Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019904.1 Corchorus olitorius cultivar O-4 contig19937, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3039
ACGTcount: A:0.24, C:0.22, G:0.25, T:0.30


Found at i:2214 original size:15 final size:15

Alignment explanation


    Indices: 2194--2223  Score: 60
    Period size: 15  Copynumber: 2.0  Consensus size: 15

       2184 AACACACCTT

                           
       2194 TTGCTGTGTTTTCTC
          1 TTGCTGTGTTTTCTC

                           
       2209 TTGCTGTGTTTTCTC
          1 TTGCTGTGTTTTCTC

       2224 ACTTGAAACC


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.00, C:0.20, G:0.20, T:0.60


Consensus pattern (15 bp):   
TTGCTGTGTTTTCTC
Done.