Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019914.1 Corchorus olitorius cultivar O-4 contig19947, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7225
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.36


Found at i:4545 original size:22 final size:23

Alignment explanation


    Indices: 4501--4547  Score: 94
    Period size: 23  Copynumber: 2.0  Consensus size: 23

       4491 ACTTGGTGTC

                                   
       4501 AACTGTCATGAAACCAAAAAAAA
          1 AACTGTCATGAAACCAAAAAAAA

                                   
       4524 AACTGTCATGAAACCAAAAAAAA
          1 AACTGTCATGAAACCAAAAAAAA

             
       4547 A
          1 A

       4548 GTGGTTTTTA


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   24  1.00

ACGTcount: A:0.62, C:0.17, G:0.09, T:0.13


Consensus pattern (23 bp):   
AACTGTCATGAAACCAAAAAAAA
Done.