Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019915.1 Corchorus olitorius cultivar O-4 contig19948, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6864
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.30


Found at i:6144 original size:2 final size:2

Alignment explanation


    Indices: 6139--6167  Score: 58
    Period size: 2  Copynumber: 14.5  Consensus size: 2

       6129 AAAAAAACAA

                                                       
       6139 AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
          1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC A

       6168 AGTTTACCCA


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   27  1.00

ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00


Consensus pattern (2 bp):   
AC

Done.