genome.fa.s19929.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019929.1 Corchorus olitorius cultivar O-4 contig19962, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67851

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2811--2843	7	5.0	7	92	7	52	84	15	0	0	0.61
3740--3864	44	2.8	44	81	0	124	41	14	12	32	1.82
3760--4214	22	20.6	22	68	14	134	34	11	18	36	1.86
4131--4171	20	2.0	20	85	0	55	31	12	17	39	1.86
4094--4235	43	3.3	42	74	8	126	33	11	15	38	1.84
4094--4234	22	6.5	21	76	11	99	34	11	15	39	1.83
5255--5317	23	2.6	24	85	11	78	20	42	20	15	1.89
6508--7036	22	23.6	22	67	11	126	35	11	16	36	1.85
6489--6657	44	3.8	44	79	3	160	40	11	13	34	1.81
6508--6666	67	2.4	65	83	7	185	38	11	15	35	1.83
17102--17147	22	2.1	22	100	0	92	17	36	4	41	1.69
29081--29176	31	3.1	31	93	0	156	40	10	14	34	1.80
30226--30323	30	3.1	32	83	7	128	31	16	11	40	1.83
30244--30333	30	2.9	30	88	6	126	26	18	12	42	1.86
30447--30520	29	2.5	30	93	4	123	45	13	16	24	1.83
44398--44423	1	26.0	1	100	0	52	100	0	0	0	0.00
45090--45120	15	2.1	15	93	0	53	41	6	22	29	1.78
46094--46124	16	1.9	16	93	0	53	61	12	12	12	1.58
50385--50415	16	1.9	16	93	0	53	61	12	12	12	1.58
51616--51682	31	2.2	31	92	5	111	47	11	19	20	1.81
51802--51879	30	2.6	30	93	2	129	34	17	10	37	1.84
51799--51935	31	4.5	31	81	5	145	32	16	10	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51800--51935	59	2.2	61	83	6	161	32	16	11	40	1.83
52661--52698	11	3.5	11	85	10	51	57	2	0	39	1.12
53692--53724	16	2.1	17	88	11	52	48	0	0	51	1.00
53814--53894	31	2.6	31	90	0	126	39	11	14	34	1.82
53754--53894	60	2.3	62	82	2	160	41	12	14	31	1.83
54024--54090	31	2.2	31	89	5	102	20	20	11	46	1.82
54480--54525	5	9.6	5	90	9	78	21	19	0	58	1.39
55651--55990	22	15.3	22	65	16	71	37	16	9	36	1.81
55887--55995	46	2.4	46	78	6	123	43	14	7	34	1.74
55929--55990	23	2.7	23	87	0	88	45	11	3	40	1.56
59914--59974	5	12.6	5	93	6	108	21	19	0	59	1.39
61085--61570	22	22.3	22	64	19	73	37	16	8	37	1.80
61321--61429	46	2.4	46	78	6	123	43	14	7	34	1.74
61363--61424	23	2.7	23	87	0	88	45	11	3	40	1.56
61659--61754	44	2.2	42	80	10	97	37	15	8	38	1.78
61663--61852	22	8.6	22	71	11	77	36	17	8	36	1.81
61796--61937	22	6.4	22	73	15	64	29	14	11	43	1.82
61818--61937	22	5.4	21	70	21	77	29	14	12	44	1.81
61972--62026	28	1.9	29	88	3	85	40	5	9	45	1.59
62021--62123	44	2.3	44	80	5	109	36	18	10	33	1.85
62017--62125	22	4.9	22	76	6	94	35	18	11	34	1.86
62017--62123	45	2.4	44	78	6	117	36	17	11	34	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62140--62246	22	4.7	23	79	8	112	40	13	7	39	1.72
62304--62492	44	4.3	43	76	7	150	35	14	12	38	1.83
62348--62466	43	2.7	43	81	1	121	34	15	13	36	1.87
62304--62472	65	2.6	65	78	3	180	36	15	11	36	1.85
62308--62492	22	8.5	22	74	8	119	35	14	12	37	1.83
62568--62618	21	2.4	22	80	6	59	41	13	11	33	1.81
62578--62617	21	1.9	21	89	0	62	37	12	12	37	1.81
63192--63228	19	1.9	19	88	0	56	29	8	21	40	1.82
63249--63387	22	6.4	22	80	1	118	32	11	17	38	1.85
63266--63387	44	2.8	43	80	6	138	31	11	16	40	1.84

Tables:   1

The End!