Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019930.1 Corchorus olitorius cultivar O-4 contig19963, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24167

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
345--521
94
1.9
94
82
6
225
36
7
20
35
1.82
149--626
22
21.5
22
69
10
204
37
9
17
34
1.83
508--654
22
6.6
21
76
9
69
33
13
14
38
1.86
1537--1633
47
2.0
48
92
2
160
35
10
5
49
1.59
3531--3556
12
2.2
12
100
0
52
38
7
0
53
1.30
3584--3639
18
2.9
18
80
20
60
42
12
10
33
1.77
3584--3696
40
2.7
40
80
10
113
40
13
9
36
1.77
3584--4103
22
23.5
22
69
14
178
35
17
10
36
1.84
3665--3717
20
2.5
21
81
9
63
41
13
11
33
1.80
3621--3726
43
2.4
45
80
7
121
38
15
11
34
1.83
3862--3911
26
1.9
26
91
0
82
28
32
10
30
1.89
5269--5618
120
2.9
118
93
3
612
33
7
23
35
1.83
5956--5988
4
8.2
4
100
0
66
24
0
24
51
1.48
7644--7709
21
3.3
21
64
23
61
43
22
3
30
1.68
7639--7716
38
2.0
39
97
2
149
41
24
5
29
1.76
7692--7935
121
2.0
121
97
0
461
40
27
5
26
1.79

Tables:   1

The End!