Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019932.1 Corchorus olitorius cultivar O-4 contig19965, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33224

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
422--760
179
1.9
178
87
5
506
34
13
15
35
1.87
1180--1217
2
19.0
2
100
0
76
50
0
0
50
1.00
3358--3384
2
13.5
2
100
0
54
48
0
0
51
1.00
3589--3660
36
2.0
36
100
0
144
36
13
19
30
1.91
3678--3884
103
2.0
103
97
0
387
29
16
19
34
1.94
4164--4211
20
2.3
20
79
10
53
77
2
6
14
1.06
9706--9740
11
3.2
11
87
0
52
80
14
2
2
0.95
10777--10839
32
2.1
29
83
13
76
39
4
6
49
1.49
16830--16857
2
14.0
2
100
0
56
50
0
0
50
1.00
18796--18843
24
2.0
24
100
0
96
33
20
16
29
1.95
31756--31838
39
2.1
39
84
4
114
44
6
27
21
1.76

Tables:   1

The End!