Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019933.1 Corchorus olitorius cultivar O-4 contig19966, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23207

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3320--3603
22
12.8
21
75
13
230
35
18
9
36
1.84
3410--3559
65
2.3
66
81
6
189
36
20
10
34
1.86
4475--4548
29
2.5
30
88
4
105
24
16
13
45
1.83
4692--4784
31
3.1
30
92
7
154
39
10
13
35
1.80
5011--5247
126
1.9
123
86
4
332
52
1
11
35
1.46
5857--5963
31
3.4
31
90
1
151
31
17
9
41
1.82
6077--6145
29
2.3
30
87
5
95
47
14
14
23
1.81
6407--6525
59
2.0
59
100
0
238
40
1
10
47
1.47
14404--14436
17
1.9
17
93
0
57
27
18
21
33
1.96
20390--20415
13
2.0
13
100
0
52
53
0
0
46
1.00
21132--21156
13
1.9
13
100
0
50
48
8
0
44
1.32

Tables:   1

The End!