Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019934.1 Corchorus olitorius cultivar O-4 contig19967, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85664

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94--148
29
1.9
28
92
3
92
29
10
20
40
1.86
8997--9183
71
2.6
72
83
2
243
29
19
28
22
1.98
11135--11212
35
2.2
35
81
4
95
28
23
28
20
1.99
11148--11222
35
2.1
35
80
4
80
28
17
30
24
1.97
13833--13893
28
2.2
28
100
0
122
18
19
34
27
1.95
14566--14592
2
13.5
2
100
0
54
51
48
0
0
1.00
14665--14983
41
7.8
42
74
14
240
23
9
26
40
1.85
14799--14983
84
2.2
84
88
4
266
22
9
28
39
1.86
18328--18609
141
2.0
143
87
4
408
35
4
13
46
1.63
21662--21693
16
1.9
17
93
6
57
25
0
28
46
1.53
23198--23267
3
23.3
3
100
0
140
34
0
0
65
0.93
24224--24314
3
29.3
3
86
8
121
35
0
0
64
0.94
25068--25100
14
2.3
15
89
5
50
39
33
18
9
1.82
26112--26659
131
4.2
130
84
5
605
34
14
12
37
1.84
26112--26659
132
4.2
130
84
4
621
34
14
12
37
1.84
30694--30933
131
1.8
133
84
8
337
40
13
10
35
1.78
32878--33277
210
1.9
210
96
0
737
26
20
26
27
1.99
40271--40321
26
2.0
26
84
3
68
47
9
5
37
1.61
41687--41759
7
11.0
7
72
21
50
61
0
1
36
1.05
41683--41746
14
4.6
14
76
5
58
59
0
1
39
1.07
41683--41745
33
1.9
33
87
6
92
58
0
1
39
1.07
41714--41759
14
3.3
14
87
0
56
65
0
0
34
0.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42788--42817
15
2.0
15
93
0
51
36
0
0
63
0.95
46419--46443
13
1.9
13
100
0
50
44
0
0
56
0.99
47470--47504
2
17.5
2
93
0
61
45
0
2
51
1.16
48879--48904
2
13.0
2
100
0
52
50
0
0
50
1.00
49600--49638
3
13.0
3
94
0
69
64
33
2
0
1.08
49750--49790
15
2.7
15
84
0
55
46
12
0
41
1.41
49753--49844
41
2.3
41
86
5
134
47
11
1
39
1.48
50484--50600
3
39.3
3
96
1
218
66
0
0
32
0.98
52011--52050
19
2.1
19
85
4
53
67
5
0
27
1.11
53208--53244
13
2.7
14
84
15
51
56
0
0
43
0.99
53208--53240
14
2.3
15
90
10
52
51
0
0
48
1.00
53501--53539
20
2.0
20
85
10
53
30
5
0
64
1.15
53733--54228
22
22.6
22
67
14
95
38
9
15
36
1.80
53922--54165
22
10.9
22
67
14
115
38
10
13
37
1.79
54054--54253
44
4.5
44
71
6
125
40
10
15
33
1.81
54334--54860
22
24.0
22
66
17
152
39
9
15
35
1.81
54821--54868
22
2.2
22
81
7
53
45
8
16
29
1.76
55098--55124
2
13.5
2
100
0
54
48
0
0
51
1.00
55048--55154
55
1.9
55
100
0
214
43
9
16
29
1.79
56621--56661
19
2.1
20
90
4
66
12
9
14
63
1.52
56718--56795
31
2.5
32
91
2
122
34
23
8
33
1.86
57121--57145
13
1.9
13
100
0
50
40
16
12
32
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59651--59734
41
2.0
41
100
0
168
30
2
20
46
1.63
82438--82594
70
2.2
70
90
0
251
20
29
22
26
1.98

Tables:   1

The End!