genome.fa.s19936.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019936.1 Corchorus olitorius cultivar O-4 contig19969, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35804

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1685--1712	13	2.2	13	100	0	56	35	14	28	21	1.92
1872--2781	47	20.2	47	84	10	1091	47	4	19	28	1.69
2006--2190	36	4.8	36	81	15	217	52	4	18	24	1.63
2449--2527	37	2.1	37	97	0	149	51	2	16	29	1.57
2355--2750	131	2.9	131	87	7	548	46	4	19	29	1.68
7235--7669	147	2.9	147	92	5	696	25	7	21	45	1.78
16300--16457	33	4.8	33	81	0	136	38	15	27	18	1.91
16301--16454	66	2.3	66	82	2	175	38	15	27	18	1.91
18119--18166	23	2.1	23	100	0	96	20	4	20	54	1.61
18126--18175	23	2.2	23	82	7	57	26	4	24	46	1.70
18554--18583	15	2.0	15	93	0	51	53	3	0	43	1.17
18793--18904	32	3.5	32	86	2	145	45	22	16	15	1.85
18793--18923	64	2.0	64	85	2	174	48	21	16	14	1.81
18814--18923	32	3.4	32	83	5	141	47	22	16	13	1.82
20039--20080	4	10.8	4	94	5	77	76	0	23	0	0.79
26672--26735	21	3.1	21	86	2	85	54	9	25	10	1.65
33748--33778	2	15.5	2	100	0	62	48	0	0	51	1.00
34917--35017	47	2.2	47	87	8	147	19	20	4	54	1.63
34991--35143	22	7.1	22	80	7	179	13	22	6	56	1.60
35154--35797	47	14.1	46	79	12	400	27	20	5	46	1.74
35134--35804	91	7.3	92	79	13	568	26	20	6	46	1.74
35385--35453	36	2.0	34	86	10	97	30	17	7	44	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35417--35804	47	8.5	46	87	4	520	28	19	5	45	1.74

Tables:   1

The End!