Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019938.1 Corchorus olitorius cultivar O-4 contig19971, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11784
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:11409 original size:2 final size:2

Alignment explanation


    Indices: 11402--11441  Score: 80
    Period size: 2  Copynumber: 20.0  Consensus size: 2

      11392 TTACTACTGC

                                                                       
      11402 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

      11442 GTTAGAAAAA


Statistics
Matches: 38,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   38  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
TA

Done.