Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019940.1 Corchorus olitorius cultivar O-4 contig19973, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14870

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91--120
15
1.9
16
93
6
53
46
6
6
40
1.56
410--502
45
2.2
43
84
9
129
36
21
6
35
1.79
1622--1702
22
3.7
22
80
8
94
39
9
11
39
1.74
1739--1793
21
2.6
22
77
13
62
29
20
10
40
1.86
3541--3575
11
3.2
11
83
0
52
77
17
5
0
0.96
3973--4005
10
3.4
10
87
8
50
63
0
0
36
0.95
4646--4697
27
1.9
26
85
14
70
50
1
7
40
1.42
4754--4893
71
2.0
72
97
1
264
31
11
15
41
1.83
10335--10361
2
13.5
2
100
0
54
51
0
0
48
1.00
11405--11485
25
3.4
25
75
16
98
30
14
16
38
1.89

Tables:   1

The End!