Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019944.1 Corchorus olitorius cultivar O-4 contig19977, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65604

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9611--9676
24
2.8
24
92
0
114
16
21
36
25
1.94
11324--11355
6
5.3
6
96
0
55
0
37
0
62
0.95
21293--21345
11
4.9
10
78
13
52
15
11
18
54
1.70
21410--21474
30
2.2
30
88
5
96
49
1
4
44
1.32
21403--21480
30
2.5
32
77
16
90
48
1
5
44
1.32
22437--22497
29
2.1
29
96
0
113
39
11
3
45
1.57
22709--22753
23
2.0
23
86
0
63
26
17
15
40
1.90
34899--34940
22
1.9
22
90
0
66
26
11
11
50
1.74
40492--40539
24
2.0
24
83
0
60
47
2
18
31
1.60
40972--40996
6
4.2
6
100
0
50
0
0
36
64
0.94
42133--42205
36
2.0
37
89
2
112
34
15
32
17
1.91
45407--45532
63
2.0
63
93
0
216
41
24
11
23
1.86
52898--52957
30
2.0
30
96
0
111
36
18
36
8
1.81
60405--60455
19
2.9
17
81
16
59
54
1
1
41
1.22
63598--63821
22
10.0
22
69
15
113
33
10
17
38
1.84
63598--63770
66
2.6
66
77
10
185
34
10
16
37
1.84
63739--63799
25
2.5
25
81
2
70
37
8
16
37
1.78
63858--63942
44
1.9
44
80
4
100
36
9
18
35
1.84
63839--63956
22
5.4
22
73
8
78
36
10
18
34
1.85
64022--64280
22
11.6
23
70
17
113
42
10
13
33
1.78
64505--64600
23
4.3
22
84
10
106
38
8
16
36
1.79
64398--64600
104
1.9
105
81
5
241
41
7
15
34
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64375--64809
22
19.9
22
70
11
225
37
9
16
35
1.82
64681--64898
22
9.9
22
67
13
72
37
11
16
34
1.85
64864--64911
22
2.2
22
92
0
78
52
10
10
27
1.68

Tables:   1

The End!