Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019945.1 Corchorus olitorius cultivar O-4 contig19978, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37259

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93--126
2
17.0
2
100
0
68
50
0
0
50
1.00
768--821
27
2.0
27
100
0
108
37
18
3
40
1.69
2110--2137
13
2.2
13
100
0
56
7
0
14
78
0.95
2403--2436
2
16.5
2
87
6
50
47
5
0
47
1.26
4765--4802
15
2.5
15
100
0
76
34
5
42
18
1.73
5153--5251
43
2.3
44
83
1
119
34
6
15
44
1.71
5153--5251
22
4.5
22
80
2
101
34
6
15
44
1.71
6729--6776
18
2.6
19
78
15
57
18
6
18
56
1.62
8653--8710
20
2.8
21
73
19
59
62
3
5
29
1.33
12386--12422
2
18.5
2
100
0
74
51
0
0
48
1.00
12730--13068
178
1.9
177
87
4
495
35
16
13
34
1.88
13174--13223
23
2.1
25
81
7
59
54
10
16
20
1.70
13293--13333
7
6.0
7
80
13
50
14
0
2
82
0.76
13299--13335
18
2.1
18
90
10
58
16
0
0
83
0.64
13293--13333
13
3.0
14
86
10
50
14
0
2
82
0.76
14409--14489
40
2.0
40
88
4
119
29
11
17
41
1.84
14527--14559
13
2.5
13
95
0
57
18
36
6
39
1.75
14569--14649
40
2.0
40
88
4
119
44
17
8
29
1.78
14749--14780
13
2.5
13
94
0
55
31
6
50
12
1.65
21291--21342
27
2.0
26
85
7
70
5
11
17
65
1.44
28968--29015
24
2.0
24
100
0
96
25
4
16
54
1.60
29939--29973
11
3.2
11
83
0
52
80
14
2
2
0.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33752--33813
30
2.1
30
93
0
106
25
22
4
46
1.71
34417--34454
19
2.0
20
85
10
53
2
15
5
76
1.08

Tables:   1

The End!