Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019946.1 Corchorus olitorius cultivar O-4 contig19979, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47133

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3160--3200
20
2.0
20
85
0
55
31
9
14
43
1.78
9804--10090
41
6.8
42
77
6
242
23
12
25
38
1.90
9802--10090
84
3.4
84
87
0
407
23
12
25
38
1.90
11817--11981
60
2.8
60
81
3
188
27
16
17
38
1.92
22106--22170
31
2.1
31
88
5
96
13
21
32
32
1.93
38815--38844
15
2.0
15
93
0
51
50
13
0
36
1.42
39577--39617
21
2.0
21
85
0
55
53
0
0
46
1.00
43784--43847
25
2.6
25
97
0
119
15
10
20
53
1.72
44718--45048
41
7.9
41
79
12
352
21
10
25
42
1.84
44718--45048
84
3.9
85
89
2
499
21
10
25
42
1.84
45764--45859
45
2.2
42
89
7
140
35
3
22
38
1.70
46197--46293
24
4.1
24
94
2
169
47
13
17
21
1.82
46197--46293
47
2.0
48
94
2
169
47
13
17
21
1.82
46566--46670
45
2.3
45
83
3
131
41
17
13
27
1.86

Tables:   1

The End!