Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019948.1 Corchorus olitorius cultivar O-4 contig19981, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  111623

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
464--505
11
4.0
11
87
9
61
0
26
0
73
0.83
3799--3851
14
3.3
15
82
17
54
41
3
0
54
1.18
6170--6220
19
2.7
19
77
14
61
50
1
0
47
1.12
9829--9873
23
2.0
23
100
0
90
46
13
13
26
1.80
9887--10013
4
31.8
4
100
0
254
49
25
0
25
1.50
17381--17638
126
2.0
126
100
0
516
40
20
16
22
1.91
27748--27789
12
3.6
12
80
6
50
11
19
7
61
1.52
27750--27799
23
2.2
22
89
3
73
8
20
6
66
1.40
33893--33924
15
2.1
15
94
0
55
65
0
28
6
1.16
52710--52776
33
2.0
33
94
0
116
49
19
10
20
1.77
56054--56207
76
2.0
76
100
0
308
19
26
20
33
1.96
74902--74935
12
2.8
12
90
4
50
52
2
2
41
1.31
78760--78800
21
1.9
22
85
14
59
26
9
14
48
1.75
86279--86341
31
2.2
29
77
11
67
28
19
12
39
1.88
87011--87053
21
2.0
21
90
0
68
51
16
32
0
1.45
90042--90106
31
2.2
30
86
5
87
35
13
23
27
1.93
91922--91952
16
1.9
16
93
0
53
32
16
25
25
1.96
92409--92446
2
19.0
2
100
0
76
50
0
0
50
1.00
92829--92877
22
2.2
22
88
0
80
42
6
18
32
1.75
95554--95726
37
4.7
39
79
9
166
20
34
15
29
1.93
96001--96038
6
6.2
6
96
3
67
15
15
0
68
1.22
107689--107826
68
2.0
68
98
0
267
26
15
26
31
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108624--108684
29
2.2
29
85
5
81
37
1
3
57
1.25

Tables:   1

The End!