Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019949.1 Corchorus olitorius cultivar O-4 contig19982, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94493

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4481--4586
52
2.0
52
98
0
203
23
24
13
38
1.90
7758--7821
33
1.9
33
84
6
85
17
14
31
37
1.89
17967--18222
123
2.0
128
90
6
414
38
10
1
49
1.45
18208--18246
14
2.9
13
80
3
51
41
2
2
53
1.28
24779--24810
2
16.0
2
100
0
64
50
0
0
50
1.00
29150--29355
102
2.0
102
97
0
385
28
8
24
39
1.84
35266--35314
22
2.4
19
77
12
53
51
8
2
38
1.43
35274--35315
20
2.0
22
86
9
61
50
7
2
40
1.43
44233--44296
21
3.2
20
82
8
76
35
12
20
31
1.90
44239--44296
19
2.9
19
84
5
71
36
12
20
31
1.89
46255--46422
31
5.5
31
71
18
156
31
20
20
27
1.97
46294--46391
29
3.3
29
73
16
110
29
18
22
29
1.97
46259--46423
60
2.8
60
96
1
296
32
20
21
26
1.97
46465--46620
60
2.6
60
88
3
217
28
17
16
37
1.92
57062--57087
13
2.0
13
100
0
52
61
7
7
23
1.49
62774--62800
6
4.5
6
100
0
54
0
14
0
85
0.61
68521--68556
18
2.0
18
100
0
72
27
5
22
44
1.75
68535--68618
42
2.0
42
97
0
159
19
7
17
55
1.64
80075--80104
11
2.7
11
94
0
51
50
0
0
50
1.00
80074--80104
15
2.1
15
93
0
53
51
0
0
48
1.00
81456--81557
51
2.0
50
80
12
111
21
21
13
43
1.87
88950--88988
19
2.0
19
85
5
51
15
5
5
74
1.17
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
92631--92724
45
2.2
43
88
7
138
38
23
4
34
1.74
93878--93923
22
2.0
23
84
12
60
58
13
0
28
1.35

Tables:   1

The End!