Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019951.1 Corchorus olitorius cultivar O-4 contig19984, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  154360

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16084--16110
7
3.9
7
100
0
54
29
14
14
40
1.86
30266--30310
15
2.9
15
84
15
65
46
0
48
4
1.22
31384--31442
16
3.7
16
82
10
68
5
35
1
57
1.31
31919--31957
11
3.6
11
82
6
53
0
41
0
58
0.98
31919--31957
5
7.4
5
83
11
51
0
41
0
58
0.98
35358--35428
2
36.5
2
78
10
76
45
1
1
52
1.18
36125--36285
70
2.3
70
100
0
322
22
8
13
55
1.65
36796--36850
25
2.1
27
90
6
87
27
12
7
52
1.65
57653--57750
49
2.0
49
100
0
196
38
20
16
24
1.92
59440--59498
30
2.0
30
96
0
109
45
0
25
28
1.54
59730--59830
53
1.9
52
85
2
139
18
15
27
37
1.92
74964--75004
6
6.8
6
83
10
57
17
0
0
82
0.66
82667--82715
22
2.3
21
78
3
53
12
51
0
36
1.40
83847--83942
48
2.0
48
100
0
192
31
10
4
54
1.53
83915--83947
17
1.9
17
93
0
57
36
12
0
51
1.39
92790--92839
18
2.8
18
81
0
55
26
50
12
12
1.74
92831--92975
63
2.4
61
87
3
193
27
53
8
10
1.65
92991--93125
27
5.0
27
90
0
189
26
56
5
11
1.56
93051--93123
15
5.3
15
69
24
70
28
54
5
10
1.57
93093--93162
36
1.9
36
88
0
104
22
57
8
11
1.61
99235--99835
165
3.5
167
80
9
622
39
16
22
21
1.92
99235--99881
347
1.9
346
82
5
822
39
16
23
20
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
101683--103242
175
9.0
175
83
2
1883
25
26
13
34
1.93
101684--103242
350
4.5
350
87
2
2079
25
26
13
34
1.93
117033--117076
22
2.0
22
91
4
72
36
6
4
52
1.49
118040--118077
16
2.4
16
100
0
76
28
23
21
26
1.99
118458--118601
60
2.4
59
81
5
173
44
13
18
22
1.86
118609--118713
30
3.4
30
82
5
113
21
20
17
40
1.91
118935--118991
26
2.2
26
78
9
64
52
0
3
43
1.18
120741--120801
29
2.1
29
87
3
88
36
1
39
22
1.64
124888--125010
58
2.1
59
92
3
203
30
21
16
32
1.95
132296--132325
13
2.3
13
94
0
51
23
13
0
63
1.29
133521--133561
2
21.0
2
95
5
75
51
0
0
48
1.00
134509--134562
27
2.0
27
96
0
99
25
24
27
22
2.00
134510--134568
27
2.2
27
90
0
91
25
25
25
23
2.00
134978--137008
643
3.2
635
77
8
1625
37
15
14
32
1.88
136454--139610
332
9.5
328
76
8
2552
37
15
13
33
1.87
143703--143744
19
2.2
19
91
0
66
64
19
4
11
1.44
147398--147462
31
2.1
31
97
0
121
20
9
16
53
1.70
151550--151640
22
3.9
22
72
20
85
18
23
16
41
1.90

Tables:   1

The End!