Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019954.1 Corchorus olitorius cultivar O-4 contig19987, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47766

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
970--1002
2
16.5
2
100
0
66
51
0
0
48
1.00
2339--2410
19
4.1
19
72
20
75
34
30
0
34
1.58
2765--2805
17
2.3
18
91
4
66
36
4
2
56
1.34
3267--3293
9
3.0
9
100
0
54
66
0
0
33
0.92
7168--7226
26
2.3
26
88
5
84
61
5
3
30
1.34
9810--9977
85
2.0
84
94
1
291
41
22
11
24
1.87
22711--22753
18
2.4
18
80
0
50
37
46
9
6
1.63
23699--23740
20
2.0
21
86
4
59
35
4
4
54
1.42
32808--32860
28
1.9
27
88
3
79
30
18
22
28
1.98
33302--33679
178
2.1
177
81
5
449
37
14
14
33
1.87
33877--33907
10
3.1
10
100
0
62
29
0
0
70
0.87
38492--38541
25
2.0
25
88
0
73
6
44
4
46
1.47
39511--39535
2
12.5
2
100
0
50
52
0
0
48
1.00
39615--39644
2
15.0
2
100
0
60
50
0
0
50
1.00
40594--40670
31
2.6
30
75
8
77
37
15
27
19
1.92
41879--41903
2
12.5
2
100
0
50
52
0
0
48
1.00
44766--44806
11
3.8
11
83
3
57
48
0
0
51
1.00
44773--44807
15
2.3
15
90
0
52
45
0
0
54
0.99
45157--45187
13
2.4
13
94
0
53
54
29
0
16
1.42

Tables:   1

The End!