Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019958.1 Corchorus olitorius cultivar O-4 contig19991, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23953

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
647--684
19
2.1
19
85
14
53
31
5
10
52
1.58
4794--4819
1
26.0
1
100
0
52
0
0
0
100
0.00
13621--13664
21
2.1
21
86
0
61
38
9
22
29
1.85
14079--14114
16
2.3
16
95
4
65
86
5
5
2
0.79
14597--14655
27
2.1
28
85
14
79
45
6
0
47
1.29
16338--16384
23
2.1
23
88
7
71
42
6
17
34
1.74
16351--16406
22
2.5
23
85
2
69
41
5
12
41
1.66
16391--16450
22
2.7
21
73
14
50
40
6
8
45
1.61
18245--18373
11
11.8
11
68
11
70
44
3
0
52
1.16
18248--18372
9
12.8
9
67
18
54
44
3
0
52
1.17
18271--18314
18
2.3
19
88
7
63
38
2
0
59
1.10
18299--18373
30
2.5
30
97
0
141
46
2
0
50
1.15
23688--23722
15
2.3
15
100
0
70
11
8
34
45
1.71

Tables:   1

The End!