Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019966.1 Corchorus olitorius cultivar O-4 contig19999, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49782

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6548--6642
50
1.9
50
95
0
172
41
9
29
20
1.83
10997--11080
29
2.8
29
83
8
107
41
11
25
21
1.87
13529--13639
59
1.9
58
90
1
177
34
14
17
34
1.90
14903--14972
36
1.9
36
88
5
106
21
10
7
61
1.51
15983--16029
25
1.9
24
95
4
85
55
8
6
29
1.55
16020--16100
39
2.0
40
90
2
128
38
3
6
51
1.45
19527--19590
21
3.2
20
82
8
76
37
12
20
29
1.89
19533--19590
19
2.9
19
84
5
71
37
12
20
29
1.89
33980--34011
14
2.2
15
94
5
57
31
21
15
31
1.95
40819--40935
59
1.9
62
87
5
177
18
12
17
50
1.78
47793--47817
13
1.9
13
100
0
50
40
8
12
40
1.72
48069--48141
38
1.9
38
94
0
128
50
9
10
28
1.69
48616--48760
70
2.1
70
96
0
263
45
22
6
26
1.75
49177--49640
22
20.9
22
70
10
167
34
17
10
36
1.85
49450--49573
46
2.8
45
84
6
146
35
12
11
40
1.80
49557--49655
44
2.2
44
83
3
119
35
16
10
38
1.82

Tables:   1

The End!