Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019967.1 Corchorus olitorius cultivar O-4 contig20000, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1861
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33


Found at i:1088 original size:11 final size:11

Alignment explanation


    Indices: 1048--1081  Score: 68
    Period size: 11  Copynumber: 3.1  Consensus size: 11

       1038 AGGAGTAGGG

                       
       1048 TCCTTCCTAGC
          1 TCCTTCCTAGC

                       
       1059 TCCTTCCTAGC
          1 TCCTTCCTAGC

                       
       1070 TCCTTCCTAGC
          1 TCCTTCCTAGC

             
       1081 T
          1 T

       1082 TTTTCCTTTA


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   23  1.00

ACGTcount: A:0.09, C:0.44, G:0.09, T:0.38


Consensus pattern (11 bp):   
TCCTTCCTAGC
Done.