Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019969.1 Corchorus olitorius cultivar O-4 contig20002, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22904

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
976--1042
33
2.0
34
88
5
102
41
20
8
28
1.83
983--1087
33
3.2
32
83
11
115
44
23
7
23
1.79
1019--1123
33
3.2
33
81
8
115
45
21
6
25
1.76
1701--1732
15
2.1
15
100
0
64
15
6
28
50
1.68
2660--2706
26
1.9
24
87
12
69
40
4
27
27
1.75
2660--2716
28
2.1
26
81
12
62
43
3
26
26
1.70
3571--3662
21
4.4
21
91
2
141
27
28
18
26
1.98
6291--6375
43
2.0
43
95
0
152
44
7
4
43
1.52
7742--8299
46
12.0
46
85
6
641
38
17
25
18
1.92
9150--9187
11
3.5
11
85
10
51
57
2
0
39
1.12
9509--9569
31
2.1
31
84
9
83
32
1
9
55
1.42
12712--12741
11
2.7
11
89
0
51
46
6
40
6
1.56
13122--13192
21
3.4
21
92
3
117
25
23
21
29
1.99
17721--17850
49
2.6
49
90
3
190
37
14
16
31
1.89
18900--18949
21
2.4
21
90
6
75
28
26
18
28
1.98

Tables:   1

The End!