Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019970.1 Corchorus olitorius cultivar O-4 contig20003, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  13938

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
466--702
124
1.9
125
84
4
318
35
10
1
51
1.47
852--944
29
3.1
29
85
8
123
34
13
11
39
1.82
1071--1144
29
2.5
30
84
4
87
44
12
17
25
1.83
2983--3007
2
12.5
2
100
0
50
0
48
0
52
1.00
3007--3034
2
14.0
2
100
0
56
50
0
0
50
1.00
3883--3953
21
3.3
22
78
9
65
38
5
18
38
1.74
3895--4053
22
7.2
21
76
9
83
37
8
14
38
1.77
3895--4053
44
3.6
43
80
9
155
37
8
14
38
1.77
4368--4466
21
4.5
22
82
9
105
46
9
17
27
1.78
4363--4450
42
2.0
45
84
6
119
46
9
18
26
1.78
4455--4574
22
5.5
21
75
13
109
45
8
8
38
1.65
6247--6335
44
2.0
44
97
0
169
28
24
20
26
1.99
6436--6487
27
2.0
26
81
11
61
44
30
7
17
1.77
11951--11988
18
2.1
19
90
5
60
18
39
13
28
1.88
12501--12613
48
2.4
48
88
5
158
46
20
22
11
1.82
12810--12850
20
2.0
21
95
4
75
19
17
29
34
1.94

Tables:   1

The End!