Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019974.1 Corchorus olitorius cultivar O-4 contig20007, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5295
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.30


Found at i:1825 original size:20 final size:20

Alignment explanation


    Indices: 1800--1856  Score: 114
    Period size: 20  Copynumber: 2.9  Consensus size: 20

       1790 AATTACAACT

                                
       1800 ACTCTTGTCTATCTTTTTCA
          1 ACTCTTGTCTATCTTTTTCA

                                
       1820 ACTCTTGTCTATCTTTTTCA
          1 ACTCTTGTCTATCTTTTTCA

                             
       1840 ACTCTTGTCTATCTTTT
          1 ACTCTTGTCTATCTTTT

       1857 GAGGAATAAT


Statistics
Matches: 37,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   37  1.00

ACGTcount: A:0.14, C:0.25, G:0.05, T:0.56


Consensus pattern (20 bp):   
ACTCTTGTCTATCTTTTTCA
Done.